View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3040R-Insertion-17 (Length: 965)
Name: NF3040R-Insertion-17
Description: NF3040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040R-Insertion-17 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 9 - 810
Target Start/End: Original strand, 8106839 - 8107636
Alignment:
| Q |
9 |
aagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcnnnnnnnttatacattgattaacaaatgagtgtcatgatctattttgattggt |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8106839 |
aagatgtgcaaatcaacaatgagaaatagacatctaattaaataggcaaaaaaattatacattgattaacaaatgagtgtcatgatctattttgattggt |
8106938 |
T |
|
| Q |
109 |
tgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatgaatttgaaacnnnnnnnnn-gttgtaaaaattatata |
207 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |
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| T |
8106939 |
tgttgtaaaata----gatgagtcataatcaattttgattggatgataaagaaacattaaatgaatttgaaacttttttttttgttgtaaaaattataca |
8107034 |
T |
|
| Q |
208 |
nnnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcctcttcaactnnnnnnnn-tgaagctgcttagtactgtt |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
8107035 |
tttttttatgcaaacatttgt---atatagtgtgcggcagctgctcatctcttttaacattcccttcaactaaaaaaaaatgaagctgcttagtactgtt |
8107131 |
T |
|
| Q |
307 |
gttttgatgatgatctttctggcatctgcttacgctgttgatgaagatgagtctccaacaataacaatctctgaatttgaatcatatccaactctttcag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
8107132 |
gttttgatgatgatctttctggcatctgcttattctgttgttga---tgagtctccaacaataacactctctgaatttgaatcatatccaacactttcag |
8107228 |
T |
|
| Q |
407 |
aagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagcagcaacgagatgaagaaacgtagagaaatatttaagaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
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| T |
8107229 |
aagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagcagcaacgagatgaagaaacgtcgagaactattcaagaa |
8107328 |
T |
|
| Q |
507 |
ggaattggaacatgttaaggagtttaacaaaggta-ttttttaatccatccagtttgttttagattcaattcaataatcgatcagattatcagttgttag |
605 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||| || |||||||||||||||||| |||||||| ||||||| |
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|
| T |
8107329 |
gaaattggaacatgttaaggagtttaacaaaggtaatttttttatctatctagtttgtttaagtttcaattcaataatcgatgagattatcgattgttag |
8107428 |
T |
|
| Q |
606 |
tagtattttaaatatctttctctttctctgtaatgaatttcacaggtaaccacagttacacaattggcataaatcaattttctgatcgaactgaagaaga |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
8107429 |
tagtattttaaatatctttctctttctctgtaatgaattccacaggtaatcacagttacacaattggcataaatcaattttctgattgaactgaagaaga |
8107528 |
T |
|
| Q |
706 |
gttgtctgtatcatgtgtagaggacgacgacaactactaatggtattttcaatgaaaga---agatcgttacataggttgtttctgatctacaaaataaa |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |
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|
| T |
8107529 |
gttgtctgtatcatgtgtagaggacgacgacaattacgaatggtattttcaatgaaagaattagatcgtcacatagcgtgtttctgatctacaaaataaa |
8107628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 70 - 812
Target Start/End: Original strand, 8111546 - 8112286
Alignment:
| Q |
70 |
ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaa |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8111546 |
ttgattaacaaatgagtgtcatgatctattttgattggttgttgtaaaata----gatgagtcataatcaattttgattggatgataaagaaacattaaa |
8111641 |
T |
|
| Q |
170 |
tgaatttgaaacnnnnnnnnngttgtaaaaattatatannnnnnnatgcaaacatttgttgtatatagtgtgcggcagctgctcatctcttttaacatcc |
269 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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|
| T |
8111642 |
tgaatttgaaactttttttttgttgtaaaaattatacttttttttatgcaaacatttgt---atatagtgtgcggcagctgctcatctcttttaacattc |
8111738 |
T |
|
| Q |
270 |
tcttcaactnnnnnnnn-tgaagctgcttagtactgttgttttgatgatgatctttctggcatctgcttacgctgttgatgaagatgagtctccaacaat |
368 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
8111739 |
ccttcaactaaaaaaaaatgaagctgcttagtactgttgttttgatgatgatctttctggcatctgcttattctgttgttga---tgagtctccaacaat |
8111835 |
T |
|
| Q |
369 |
aacaatctctgaatttgaatcatatccaactctttcagaagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagc |
468 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8111836 |
aacactctctgaatttgaatcatatccaacactttcagaagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagc |
8111935 |
T |
|
| Q |
469 |
agcaacgagatgaagaaacgtagagaaatatttaagaaggaattggaacatgttaaggagtttaacaaaggt-attttttaatccatccagtttgtttta |
567 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| | |
|
|
| T |
8111936 |
agcaacgagatgaagaaacgtcgagaactattcaagaagaaattggaacatgttaaggagtttaacaaaggtaatttttttatctatctagtttgtttaa |
8112035 |
T |
|
| Q |
568 |
gattcaattcaataatcgatcagattatcagttgttagtagtattttaaatatctttctctttctctgtaatgaatttcacaggtaaccacagttacaca |
667 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
8112036 |
gtttcaattcaataatcgatgagattatcgattgttagtagtattttaaatatctttctctttctctgtaatgaattccacaggtaatcacagttacaca |
8112135 |
T |
|
| Q |
668 |
attggcataaatcaattttctgatcgaactgaagaagagttgtctgtatcatgtgtagag---gacgacgacaactactaatggtattttcaatgaaaga |
764 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
8112136 |
attggcataaatcaattttctgatcgaactgaagaagagttgtctgtatcatgtgtagaggacgacgacgacaactacgaatggtattttcaatgaaaga |
8112235 |
T |
|
| Q |
765 |
---agatcgttacataggttgtttctgatctacaaaataaactcaaaacgg |
812 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
8112236 |
attagatcgtcacatagcgtgtttctgatctataaaataaactcaaaacgg |
8112286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 529 - 810
Target Start/End: Original strand, 8093698 - 8093973
Alignment:
| Q |
529 |
tttaacaaaggtattttttaatccatccagtttgttttagattcaattcaataatcgatcagattatcagttgttagtagtattttaaatatctttctct |
628 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| | || ||||||||||||||| || |||| | ||||| |||||||||||| ||||||| ||| |
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|
| T |
8093698 |
tttaacaaaggtatttttttatccatccggttt---tcagtttcaattcaataatcaatgagatga---gttgtatgtagtattttaagtatctttatct |
8093791 |
T |
|
| Q |
629 |
ttctctgtaatgaatttcacaggtaaccacagttacacaattggcataaatcaattttctgatcgaactgaagaagagttgtctgtatcatgt---gtag |
725 |
Q |
| |
|
||| ||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||| ||| |
|
|
| T |
8093792 |
ttcattgtaatgaatttcgcaggtaatcacagttacataattggcataaattaattttctgatttaactaaagaagagtcatctgtatcatgtttcatag |
8093891 |
T |
|
| Q |
726 |
aggacgacgacaactactaatggtattttcaatgaaagaagatcgttacataggttgtttctgatctacaaaataaactcaaaac |
810 |
Q |
| |
|
||||||| ||| || | || |||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
8093892 |
aggacgaagacgacaaaaaa---tattttcaatgaaataagatcgtcgcatagcatgttcctgatctacaaaataaactcaaaac |
8093973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 902 - 955
Target Start/End: Original strand, 8112375 - 8112426
Alignment:
| Q |
902 |
tcgccggtcatggatagtccacccaaaaaagaatagatggtcttgtagtttttt |
955 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
8112375 |
tcgcgggtcatggatagtc-acccaaaaaaga-tagatggtgttgtagtttttt |
8112426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 772590 - 772690
Alignment:
| Q |
69 |
attgattaacaaatgagtgtcatgatctatttt--gattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgataaagaaatatt |
166 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||| ||| |
|
|
| T |
772590 |
attgattaacaaatgagt--catgatctattttttgattggttgttgaaaaata----gatgagtcataattcattttgattgaatgataaagaaacatt |
772683 |
T |
|
| Q |
167 |
aaatgaa |
173 |
Q |
| |
|
||||||| |
|
|
| T |
772684 |
aaatgaa |
772690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 25113457 - 25113515
Alignment:
| Q |
114 |
taaaatatatagatgagtcataatcaattttgattggatgataaagaaatattaaatga |
172 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
25113457 |
taaaatatataagtgagtcataatctattttaattggatgataaaaaaacattaaatga |
25113515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 10894588 - 10894546
Alignment:
| Q |
130 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10894588 |
gtcataatcaattttgattggatgataagaaaacattaaatga |
10894546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 38050247 - 38050289
Alignment:
| Q |
130 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
172 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
38050247 |
gtcataatccattttgattggatgataagaaaatattaaatga |
38050289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 535
Target Start/End: Complemental strand, 30879248 - 30879172
Alignment:
| Q |
459 |
atattcaagcagcaacgagatgaagaaacgtagagaaatatttaagaaggaattggaacatgttaaggagtttaaca |
535 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||||||||| | |||||| ||||||||||| || || ||||||||| |
|
|
| T |
30879248 |
atattcaagcagtgacgggatgaagaaatgtagagaaatactcaagaagaaattggaacatcttgagaagtttaaca |
30879172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 30890105 - 30890182
Alignment:
| Q |
98 |
ttttgattggttgttgtaaaatatatagatgagtcataatcaattttgattggatgat-aaagaaatattaaatgaatttga |
178 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
30890105 |
tttttattggttgttgaaaaatatat----gagtcatgatctattttgattggatgataaaaaaaacattaaatgaatttga |
30890182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 501141 - 501099
Alignment:
| Q |
130 |
gtcataatcaattttgattggatgataaagaaatattaaatga |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
501141 |
gtcataatcaattttgattggatgataagaaagtattaaatga |
501099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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