View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3040R-Insertion-6 (Length: 227)
Name: NF3040R-Insertion-6
Description: NF3040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040R-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 22863384 - 22863165
Alignment:
| Q |
8 |
acggagtccgtcagcggagacggtggagcatcaagtataaaccctacctccggtgaccggaaatacaagtgtcaatattgttgtcgagaatttgcaaact |
107 |
Q |
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| T |
22863384 |
acggaatccgtcagcggagacggtggagcatcaagtataaaccctacctccggtgaccggaaatacgagtgtcaatattgttgtcgagaatttgcaaact |
22863285 |
T |
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| Q |
108 |
cacaagccctaggtggacaccaaaacgcacacaaaaaagagcgccaacaactcaaacgagcacagttacaagcttcaagaaacgctgccgtttcgtttgt |
207 |
Q |
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| T |
22863284 |
cgcaagccctaggtggacaccaaaacgcacacaaaaaagagcgccaacaactcaaacgagcacagttacaagcttcaagaaacgctgccgtttcgtttgt |
22863185 |
T |
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| Q |
208 |
tcgaaacccgattatctccg |
227 |
Q |
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| T |
22863184 |
tcgaaacccgattatctccg |
22863165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 49774299 - 49774472
Alignment:
| Q |
54 |
cctccggtgaccggaaatacaagtgtcaatattgttgtcgagaatttgcaaactcacaagccctaggtggacaccaaaacgcacacaaaaaagagcgcca |
153 |
Q |
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| T |
49774299 |
cctccggtgaaagaaaatacgagtgccaatattgttgcagagagtttgcaaattcacaagcccttggcggacaccaaaacgctcacaaaaaagaacgtca |
49774398 |
T |
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| Q |
154 |
acaactcaaacgagcacagttacaagcttcaagaaacgctgccgtttcgtttgttcgaaacccgattatctccg |
227 |
Q |
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| T |
49774399 |
acaactcaaacgtgctcagttacaagctaaccgaaacgccgccgtgtctttcgttcgaaaccctatcatctccg |
49774472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 31520047 - 31519969
Alignment:
| Q |
70 |
atacaagtgtcaatattgttgtcgagaatttgcaaactcacaagccctaggtggacaccaaaacgcacacaaaaaagag |
148 |
Q |
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| T |
31520047 |
atacgagtgtcaatattgttgtagagaatttgcaaattcacaagccttaggaggacaccaaaatgcacacaagaaagag |
31519969 |
T |
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