View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3040_low_1 (Length: 600)
Name: NF3040_low_1
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 15 - 586
Target Start/End: Complemental strand, 1968818 - 1968247
Alignment:
| Q |
15 |
atcatcacctgaacttgtttctgtttggataattggtccaaaaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1968818 |
atcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtcccatc |
1968719 |
T |
|
| Q |
115 |
tccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaacaagtgggaggaagtgtttgtaaacttgacttgatctatcttgag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968718 |
tccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttgag |
1968619 |
T |
|
| Q |
215 |
ctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968618 |
ctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagctt |
1968519 |
T |
|
| Q |
315 |
aggcaaatagatgctccaagcaagtgtagtagcagctgcagggaagtatacataagacaacatgttgagttccttaccaatatttagtacttcaacagca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968518 |
aggcaaatagatgctccaagcaagtgtagtagcagctgcagggaagtatacataagacaacatgttgagttccttaccaatatttagtacttcaacagca |
1968419 |
T |
|
| Q |
415 |
aaagaatcaaccaccaaggtcacaagaggactttctatagccaaagacgtcaaagcgtcgtgtaaatatgggagagagttattcagtgtgaggaacattt |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968418 |
aaagaatcaaccaccaaggccacaagaggactttctatagccaaagacttcaaagcgtcgtgtaaatatgggagagagttattcagtgtgaggaacattt |
1968319 |
T |
|
| Q |
515 |
ggctttccatggtggtcccttgtggtaggtcattgggattcacaggtggaagaaaagtgtggttgatgtttg |
586 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968318 |
ggctttccatggtagtcccttgtggtaggtcattgggattcacaggtggaagaaaagtgtggttgatgtttg |
1968247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 586
Target Start/End: Original strand, 2008197 - 2008768
Alignment:
| Q |
15 |
atcatcacctgaacttgtttctgtttggataattggtccaaaaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatc |
114 |
Q |
| |
|
||||||||| || |||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||| |
|
|
| T |
2008197 |
atcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccatc |
2008296 |
T |
|
| Q |
115 |
tccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaacaagtgggaggaagtgtttgtaaacttgacttgatctatcttgag |
214 |
Q |
| |
|
|| | ||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2008297 |
tctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttgag |
2008396 |
T |
|
| Q |
215 |
ctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagctt |
314 |
Q |
| |
|
||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2008397 |
ctatgctcaagaaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagctt |
2008496 |
T |
|
| Q |
315 |
aggcaaatagatgctccaagcaagtgtagtagcagctgcagggaagtatacataagacaacatgttgagttccttaccaatatttagtacttcaacagca |
414 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2008497 |
aggcaaatagaagcaccaagcaagtgtagtagcagctgaagggaagtatatataagacaacatgttgagttccttaccaatatttagtacttcaacagaa |
2008596 |
T |
|
| Q |
415 |
aaagaatcaaccaccaaggtcacaagaggactttctatagccaaagacgtcaaagcgtcgtgtaaatatgggagagagttattcagtgtgaggaacattt |
514 |
Q |
| |
|
|||| ||||||||| |||| |||||| ||| ||||| ||||||||||| |||| | | ||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2008597 |
aaagcatcaaccactaaggccacaaggggaatttctttagccaaagacttcaatccctgatgtaaatatgggagagagttagtcagtgtgaggagaattt |
2008696 |
T |
|
| Q |
515 |
ggctttccatggtggtcccttgtggtaggtcattgggattcacaggtggaagaaaagtgtggttgatgtttg |
586 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2008697 |
ggctttccatggtagtcccttgtggtaggtcattggggttcacaggtggaagaaaagtgtggttgatgtttg |
2008768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 49 - 586
Target Start/End: Original strand, 2004851 - 2005388
Alignment:
| Q |
49 |
ggtccaaaaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaaaaacaccat |
148 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||| || ||||||||| |||||||||| |||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
2004851 |
ggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaagaacaccat |
2004950 |
T |
|
| Q |
149 |
cagcaaaacttaaaagtttaacaagtgggaggaagtgtttgtaaacttgacttgatctatcttgagctacgctcaagagatccctgccatggattggtac |
248 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||| |||||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
2004951 |
cagcaaaacttaaaagtttaagaagtgcgaggaattgtttgtaagcttgacttgacctatcttgagttgggctcatgagatccctgccatggattggtac |
2005050 |
T |
|
| Q |
249 |
acagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagcttaggcaaatagatgctccaagcaagtgtagtagca |
348 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
2005051 |
acaacctggtatttttataggcactggtatatctccatactcacatgatgtttcttcatccaacttaggcaaatagaagatccaagcaagtgtagtagca |
2005150 |
T |
|
| Q |
349 |
gctgcagggaagtatacataagacaacatgttgagttccttaccaatatttagtacttcaacagcaaaagaatcaaccaccaaggtcacaagaggacttt |
448 |
Q |
| |
|
|||| |||| |||| | ||| ||||||||||||| ||||||||||||| | ||| |||||| |||||| ||||||||||||||| |||||| ||| ||| |
|
|
| T |
2005151 |
gctgtagggtagtaaatataggacaacatgttgaattccttaccaatactcagtgcttcaaatgcaaaacaatcaaccaccaaggccacaaggggaattt |
2005250 |
T |
|
| Q |
449 |
ctatagccaaagacgtcaaagcgtcgtgtaaatatgggagagagttattcagtgtgaggaacatttggctttccatggtggtcccttgtggtaggtcatt |
548 |
Q |
| |
|
|| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2005251 |
ctttagccaaagacttcaaagcctgatgtaaatatgggagagagttattcagtgtgaggtgcatttggctttccatggtagtcccttgtggtaggtcatt |
2005350 |
T |
|
| Q |
549 |
gggattcacaggtggaagaaaagtgtggttgatgtttg |
586 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
2005351 |
agggttcacaggtggaagaaaagtatggttgatgtttg |
2005388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 440
Target Start/End: Original strand, 2011812 - 2012237
Alignment:
| Q |
15 |
atcatcacctgaacttgtttctgtttggataattggtccaaaaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatc |
114 |
Q |
| |
|
||||||| | |||| |||| |||| ||||| || ||||||| |||||| || | ||||||| ||||||| |||||| ||| | || ||||||||||||| |
|
|
| T |
2011812 |
atcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccatt |
2011911 |
T |
|
| Q |
115 |
tccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaacaagtgggaggaagtgtttgtaaacttgacttgatctatcttgag |
214 |
Q |
| |
|
|||| ||| | |||||||||||||| |||||||||||||||||||||| ||||||| || | ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
2011912 |
tccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatcttgaa |
2012011 |
T |
|
| Q |
215 |
ctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatccagctt |
314 |
Q |
| |
|
||| | ||||||||||||||||||||| |||||| ||||| |||| ||| ||||||||||| | |||||| |||||||||| |||||||||||||| ||| |
|
|
| T |
2012012 |
ctatggtcaagagatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatccaactt |
2012111 |
T |
|
| Q |
315 |
aggcaaatagatgctccaagcaagtgtagtagcagctgcagggaagtatacataagacaacatgttgagttccttaccaatatttagtacttcaacagca |
414 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||| |||||| ||||||| ||| ||||||||||||| ||| ||| ||| |||||| ||||||||||| |
|
|
| T |
2012112 |
aggcaaatagaagctccaagccagtgtactagctgctgcacaaaagtatatataggacaacatgttgaattctttagcaaagtttagtgcttcaacagca |
2012211 |
T |
|
| Q |
415 |
aaagaatcaaccaccaaggtcacaag |
440 |
Q |
| |
|
|||| |||||||||||||| |||||| |
|
|
| T |
2012212 |
aaagcatcaaccaccaaggccacaag |
2012237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 1964848 - 1964692
Alignment:
| Q |
49 |
ggtccaaaaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaaaaacaccat |
148 |
Q |
| |
|
||||||| ||||||||| | ||||||| ||||||| |||||| || | | ||||||||||||| |||| ||| | |||||||||||||| |||||||| |
|
|
| T |
1964848 |
ggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacaccat |
1964749 |
T |
|
| Q |
149 |
cagcaaaacttaaaagtttaacaagtgggaggaagtgtttgtaaacttgacttgatc |
205 |
Q |
| |
|
|||||||||||||| ||||||| || | ||||||||||||||| |||||||||||| |
|
|
| T |
1964748 |
cagcaaaacttaaacttttaacatgttgaaggaagtgtttgtaatcttgacttgatc |
1964692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 1963218 - 1962923
Alignment:
| Q |
15 |
atcatcacctgaacttgtttctgtttggataattggtccaaaaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatc |
114 |
Q |
| |
|
||||||||| || ||||| |||||||||||| ||||||| || |||||| || |||| |||||||| || ||| ||||| | |||||| ||| | |
|
|
| T |
1963218 |
atcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggacccttt |
1963119 |
T |
|
| Q |
115 |
tccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaacaagtgggaggaagtgtttgtaaacttgacttgatctatcttgag |
214 |
Q |
| |
|
|| | ||||||||||||||||| || |||||||||| || || || || |||| | |||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
1963118 |
tcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgag |
1963019 |
T |
|
| Q |
215 |
ctacgctcaagaga-tccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
310 |
Q |
| |
|
||| | |||||| | |||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1963018 |
ctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
1962923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 2018765 - 2018904
Alignment:
| Q |
186 |
tttgtaaacttgacttgatctatcttgagctacgctcaaga-gatccctgccatggattggtacacagcctggtatttttataggctctggtatatctct |
284 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||| | ||||| ||||| |||||||||||||||||||||| ||||||||| | | |||| | |
|
|
| T |
2018765 |
tttgtaagattgacttgatctatcttgagcttgg-tcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatcttt |
2018863 |
T |
|
| Q |
285 |
atactcacatgatgtttcctcatccagcttaggcaaataga |
325 |
Q |
| |
|
|||| |||||||||||||| || || ||| ||||||||| |
|
|
| T |
2018864 |
gtactgacatgatgtttccttattcaacttgagcaaataga |
2018904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 2433097 - 2432965
Alignment:
| Q |
25 |
gaacttgtttctgtttggataattggtccaaaaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattcca |
124 |
Q |
| |
|
||||||||| ||| ||||| || ||||||| ||||||||| |||| || |||||||| || ||| ||| | | ||||||| ||| | |||| ||| | |
|
|
| T |
2433097 |
gaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttcta |
2432998 |
T |
|
| Q |
125 |
ggaagctattaacaaaaacaccatcagcaaaac |
157 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |
|
|
| T |
2432997 |
agaagctattaacaagaacaccatcaacaaaac |
2432965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 325
Target Start/End: Original strand, 2015372 - 2015521
Alignment:
| Q |
176 |
ggaggaagtgtttgtaaacttgacttgatctatcttgagctacgctc-aagagatccctgccatggattggtacacagcctggtatttttataggctctg |
274 |
Q |
| |
|
|||| |||| ||||||| |||||| |||||||||||||||| |||| || ||||||| ||||| || || |||| |||||||||| |||||| | | |
|
|
| T |
2015372 |
ggagtaagtatttgtaagattgactggatctatcttgagcta-gctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccag |
2015470 |
T |
|
| Q |
275 |
gtatatctctatactcacatgatgtttcctcatccagcttaggcaaataga |
325 |
Q |
| |
|
| | |||||| ||||| ||||||||||||| ||| | ||| ||||||||| |
|
|
| T |
2015471 |
gaagatctctgtactcgcatgatgtttccttatctaacttgagcaaataga |
2015521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 572
Target Start/End: Original strand, 2015726 - 2015768
Alignment:
| Q |
530 |
tcccttgtggtaggtcattgggattcacaggtggaagaaaagt |
572 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2015726 |
tcccttgtggtaggtcattggagttcactggtggaagaaaagt |
2015768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 266 - 440
Target Start/End: Complemental strand, 18189931 - 18189757
Alignment:
| Q |
266 |
taggctctggtatatctctatactcacatgatgtttcctcatccagcttaggcaaatagatgctccaagcaagtgtagtagcagctgcagggaagtatac |
365 |
Q |
| |
|
|||||||||||| || ||| |||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||| |||| |||||| |||||||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaagctccaagccagtgtactagctgctgcacagaagtatat |
18189832 |
T |
|
| Q |
366 |
ataagacaacatgttgagttccttaccaatatttagtacttcaacagcaaaagaatcaaccaccaaggtcacaag |
440 |
Q |
| |
|
||| || |||||||||| ||| ||| || |||||| |||| |||||||||| || ||||||||||| |||||| |
|
|
| T |
18189831 |
ataggataacatgttgaattctttagcatagtttagtgcttcgacagcaaaagcatgaaccaccaaggccacaag |
18189757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 5901883 - 5901838
Alignment:
| Q |
529 |
gtcccttgtggtaggtcattgggattcacaggtggaagaaaagtgt |
574 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5901883 |
gtcccttgaggtaggtcgttgggattcacaggtggaagaaaagtgt |
5901838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 5902171 - 5902102
Alignment:
| Q |
241 |
attggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
310 |
Q |
| |
|
||||||||||| |||||| || ||||| ||||| | |||||| ||||||||||||||||||| ||||| |
|
|
| T |
5902171 |
attggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatcca |
5902102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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