View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3040_low_3 (Length: 262)

Name: NF3040_low_3
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3040_low_3
NF3040_low_3
[»] scaffold0627 (1 HSPs)
scaffold0627 (138-256)||(5751-5869)
[»] chr6 (2 HSPs)
chr6 (137-237)||(16717486-16717586)
chr6 (11-73)||(16717698-16717759)
[»] chr5 (6 HSPs)
chr5 (134-233)||(8546979-8547078)
chr5 (134-233)||(8638050-8638149)
chr5 (135-227)||(8536669-8536761)
chr5 (190-234)||(9004532-9004576)
chr5 (134-215)||(8645395-8645479)
chr5 (134-215)||(8678903-8678984)
[»] chr1 (1 HSPs)
chr1 (174-256)||(5131640-5131725)


Alignment Details
Target: scaffold0627 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 5869 - 5751
Alignment:
Q  138 agccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgt 237  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5869 agccatgaaaagaaaagagggttcaattacccctattagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgt 5770  T
Q  238 tgttattttgatattcttc 256  Q
    |||||||||||||||||||    
T  5769 tgttattttgatattcttc 5751  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 16717586 - 16717486
Alignment:
Q  137 tagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatg 236  Q
    ||||||||||||||||| |||||||||| | ||| || |||||||||| |||||||||||||  |||| ||| ||||||||||||||||||| |||||||    
T  16717586 tagccatgaaaagaaaaaagggttcaatcacccccgtaagggctagccaaagatgcaataaaagaaaatggagagttgaggaggcagaaagtgatgaatg 16717487  T
Q  237 t 237  Q
    |    
T  16717486 t 16717486  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 16717759 - 16717698
Alignment:
Q  11 ctcaataattctcatgttttcttttactgttagctt-tagtaagtatttaatatgaattgaata 73  Q
    |||||||||||||||||||  |||||| |||||||| || | ||| ||||||||||||||||||    
T  16717759 ctcaataattctcatgttt--ttttacggttagcttctaattagtctttaatatgaattgaata 16717698  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 8546979 - 8547078
Alignment:
Q  134 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatga 233  Q
    |||||||||||||||||||| ||| |||||||  |||||||||||||||  ||||||||||||||| |||||| |||||||| |||||||| | ||||||    
T  8546979 gtgtagccatgaaaagaaaaaaggattcaattgcccctgttagggctagaagaagatgcaataaagaaaaaggaaaagttgatgaggcagacaatcatga 8547078  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 8638149 - 8638050
Alignment:
Q  134 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatga 233  Q
    |||||||||||||||||||| |||||||||| |  | || ||||||||||| ||||||||||||||||||||||| |||||| ||  |||||||||||||    
T  8638149 gtgtagccatgaaaagaaaaaagggttcaataactcttgctagggctagcctaagatgcaataaagcaaaagggagagttgatgaatcagaaagtcatga 8638050  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 8536761 - 8536669
Alignment:
Q  135 tgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaag 227  Q
    ||||| ||||||||||||| | |||||||||  ||||| ||||||| ||| |||| |||||||| |||||||||||||||| |||||||||||    
T  8536761 tgtagtcatgaaaagaaaaaaaggttcaattgcccctgctagggctggccaaagacgcaataaatcaaaagggaaagttgatgaggcagaaag 8536669  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 9004576 - 9004532
Alignment:
Q  190 tgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaa 234  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  9004576 tgcaataaagcaaaagggaaagttgatgaggcagaaagtcatgaa 9004532  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 8645479 - 8645395
Alignment:
Q  134 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagcc---gaagatgcaataaagcaaaagggaaagttga 215  Q
    |||||||||||||||||||| | |||||||| |  |||| |||||||||||   ||||| |||||||||||||||||| ||||||    
T  8645479 gtgtagccatgaaaagaaaaaacggttcaataactcctgctagggctagcctaagaagaagcaataaagcaaaagggagagttga 8645395  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 8678984 - 8678903
Alignment:
Q  134 gtgtagccatgaaaagaaaagagggttcaattatccctgttagggctagccgaagatgcaataaagcaaaagggaaagttga 215  Q
    |||||||||||||||| ||| |||||||||| |  |||   |||||||||| |||| |||||||||||||||||| ||||||    
T  8678984 gtgtagccatgaaaaggaaaaagggttcaataactcctaccagggctagcctaagaagcaataaagcaaaagggagagttga 8678903  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 5131725 - 5131640
Alignment:
Q  174 tagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg---ttattttgatattcttc 256  Q
    ||||||||||| |||| ||||| ||||||||||||||| ||| | |||| ||||| ||| ||||||   ||||||||||| |||||    
T  5131725 tagggctagccaaagaggcaatgaagcaaaagggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttc 5131640  T

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