View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3040_low_4 (Length: 227)

Name: NF3040_low_4
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3040_low_4
NF3040_low_4
[»] chr6 (2 HSPs)
chr6 (13-169)||(4661232-4661385)
chr6 (152-227)||(4661018-4661093)
[»] scaffold0288 (2 HSPs)
scaffold0288 (13-169)||(21403-21555)
scaffold0288 (152-227)||(21185-21260)
[»] chr1 (2 HSPs)
chr1 (13-92)||(49319323-49319402)
chr1 (105-191)||(49324177-49324264)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 4661385 - 4661232
Alignment:
Q  13 catcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaagag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4661385 catcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaagag 4661286  T
Q  113 ttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcattt 169  Q
    ||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||    
T  4661285 ttttgttccgaatttgaaaaagactta---ttatgcattagttttataagtgcattt 4661232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 4661093 - 4661018
Alignment:
Q  152 tgttttataagtgcatttatttatagaacaatgatactcannnnnnnagtgtttatatattttctctaacacagcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  4661093 tgttttataagtgcatttatttatagaacaatgatactcatttttttagtgtttatatattttctctaacacagcc 4661018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 21555 - 21403
Alignment:
Q  13 catcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaagag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21555 catcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaagag 21456  T
Q  113 ttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcattt 169  Q
    ||||||||||||||||||| ||||   |||||||||||| |||||||||||||||||    
T  21455 ttttgttccgaatttgaaa-agac---ttattatgcattagttttataagtgcattt 21403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 21260 - 21185
Alignment:
Q  152 tgttttataagtgcatttatttatagaacaatgatactcannnnnnnagtgtttatatattttctctaacacagcc 227  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  21260 tgttttataagtgcatttatttatagaacaatgatactcatttttttagtgtttatatattttctctaacacagcc 21185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 49319323 - 49319402
Alignment:
Q  13 catcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcata 92  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||  |||||||||||||||||||||| |||||||||    
T  49319323 catcaattaagggtgctatgatatcaaacatggaatttgaagaagagtatgctctgatttcatacatgaaggggttcata 49319402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 49324177 - 49324264
Alignment:
Q  105 atcaagagttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcat----ttatttatagaacaatgatactca 191  Q
    |||||||||||||||||||||  |||||| |||||||||   | |||||||||||||||||||    ||||||||||||||||||||||||    
T  49324177 atcaagagttttgttccgaatcggaaagacacttattat---gtatttgttttataagtgcatttaattatttatagaacaatgatactca 49324264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University