View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3041_high_14 (Length: 283)
Name: NF3041_high_14
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 10982613 - 10982866
Alignment:
| Q |
12 |
gagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaag |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
10982613 |
gagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcaaattaaggaattaatggactccgataagg |
10982712 |
T |
|
| Q |
112 |
ggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtggaagttcccttgtcgctttgaataagttggctaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10982713 |
ggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcccttgtcgctttgaataagttggctca |
10982812 |
T |
|
| Q |
212 |
gttgtggaagcagaattagaagtaacataatataacttttttatatgatatgggt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10982813 |
gttgtggaagcagaattagaagtaacataatataac-tttttatatgatatgggt |
10982866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 10968663 - 10968877
Alignment:
| Q |
12 |
gagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10968663 |
gagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaag |
10968762 |
T |
|
| Q |
112 |
ggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtggaagttcccttgtcgctttgaataagttggctaa |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||| | |
|
|
| T |
10968763 |
ggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaataatctggcaca |
10968862 |
T |
|
| Q |
212 |
gttgtggaagcagaa |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10968863 |
gttgtggaagcagaa |
10968877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 11002846 - 11003010
Alignment:
| Q |
15 |
atgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaaggga |
114 |
Q |
| |
|
|||||||| ||||||||||| || | |||||| | |||||||||||||||| ||||| ||||| || ||||||| || ||||| || || ||||||| |
|
|
| T |
11002846 |
atgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaaggga |
11002945 |
T |
|
| Q |
115 |
aagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtgga |
179 |
Q |
| |
|
||||||||||| | | ||||| |||||||||| ||||||||| ||| ||| || || ||||||| |
|
|
| T |
11002946 |
aagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtgga |
11003010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 11079996 - 11080177
Alignment:
| Q |
24 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
123 |
Q |
| |
|
||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || || || ||||||||| ||| |
|
|
| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
|
| Q |
124 |
gacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtggaagttcccttgtcgctttgaataagtt |
205 |
Q |
| |
|
|| | | ||||| |||||||||||||||||||| || |||||| || ||||||| ||| ||||| | |||||| ||||| |
|
|
| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaaaagtt |
11080177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University