View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_high_16 (Length: 270)
Name: NF3041_high_16
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 54881 - 54644
Alignment:
| Q |
22 |
ctccaaagatatacacaaattcacaaataaatgaccttatctatatttttactcatgacgaaaatttctcagctaagaatcccaaaagnnnnnnntatac |
121 |
Q |
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| T |
54881 |
ctccaaagatatacacaaattcacaaataaatgaccttatctatatttttactcatgacgaaaatttctcagctaagaatcccaaaagaaaaaaatatac |
54782 |
T |
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| Q |
122 |
aacctgttcctactttatctccaagttatctaactagtggcagagaagactctattgtaccaaatagagtgaaggatcatatgaaatatatcatacttga |
221 |
Q |
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| T |
54781 |
aacctgttcctactttatctccaagttatctaactagtggcagagaagactctattgtaccaaatagagtgaaggatcatatgaaatatatcatacttga |
54682 |
T |
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| Q |
222 |
caggattcttgttccataggaaatgcttctgtaccttt |
259 |
Q |
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| T |
54681 |
caggattcttgttccaaaggaaatgcttctgtaccttt |
54644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 40753050 - 40752996
Alignment:
| Q |
172 |
tctattgtaccaaatagagtgaaggatcatatgaaatatatcatacttgacagga |
226 |
Q |
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| T |
40753050 |
tctattgttccaaatagagtgaagaatcatatgaaataagtcatacttgacagga |
40752996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 51208329 - 51208235
Alignment:
| Q |
161 |
gcagagaagactctattgtaccaaatagagtgaaggatcatatgaaatatatcatacttgacaggattcttgttccataggaaatgcttctgtac |
255 |
Q |
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| T |
51208329 |
gcagtgaagactctgttgtaccaaatagaatggagtatcatgtgaaatatatcatacttgacaggactcttatgccaaagaaaatgctgctgtac |
51208235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 41687946 - 41687890
Alignment:
| Q |
170 |
actctattgtaccaaatagagtgaaggatcatatgaaatatatcatacttgacagga |
226 |
Q |
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| T |
41687946 |
actctattgtaccaaatagaatgaagtaccatgtgatatatatcatatttgacagga |
41687890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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