View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_high_23 (Length: 236)
Name: NF3041_high_23
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9600651 - 9600430
Alignment:
| Q |
1 |
tcttcctcttcttcatcttcactatccaacgaaatcggaatgacttcatttgattctttttagggtgattgctctcttttttcaatatccatgagttctc |
100 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9600651 |
tcttcctcttcttcatattcattatccaacgaaatcggaatgacttcatttgattctttttagggtgattgctctcttttttcaatatccatgagttctc |
9600552 |
T |
|
| Q |
101 |
aaaactaagattgtgtatctaaaaaagagtatctgctctttaggactcaagatttctttgtaacacttttagggttataatgctaatattggtgggagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9600551 |
aaaactaagattgtgtatctaaaaaagagtatctgctctttaggactcaagatttctttgtaacacttttagggttataatgctaatattggtgggagaa |
9600452 |
T |
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| Q |
201 |
tttaaatttctaggaataaatt |
222 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
9600451 |
tttaaatttcttggaataaatt |
9600430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5998421 - 5998508
Alignment:
| Q |
1 |
tcttcctcttcttcatcttcactatccaacgaaatcggaatgacttcatttgattctttttagggtgattgctctcttttttcaatat |
88 |
Q |
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||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||| | || ||||| |||||||||||||||| |
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| T |
5998421 |
tcttcctcttcttcatcttcactattcaacagaattggaatcacttcatttgattctttgttggatgattagtctcttttttcaatat |
5998508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 11344122 - 11344008
Alignment:
| Q |
13 |
tcatcttcactatccaacgaaatcggaatgacttcatttgattctttttagggtgattgctctcttttttcaatatccatgagttctcaaaactaagatt |
112 |
Q |
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|||||||||||||| | | ||| | ||| ||||||||||||||| | | ||||| ||| |||| | ||||||||||||| | |||||||||| |||||| |
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| T |
11344122 |
tcatcttcactatcaagaggaatggaaatcacttcatttgattctctcttgggtggttgatctcctctttcaatatccataatttctcaaaaccaagatt |
11344023 |
T |
|
| Q |
113 |
gtgtatctaaaaaag |
127 |
Q |
| |
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|| |||| ||||||| |
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| T |
11344022 |
gtctatccaaaaaag |
11344008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 23502552 - 23502432
Alignment:
| Q |
8 |
cttcttcatcttcactatccaacgaaatcg-gaatgacttcatttgattctttttagggtgattgctctcttttttcaatatccatgagttctcaaaact |
106 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |||| || | || | ||||||||||||| ||||||| |||| |
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| T |
23502552 |
cttcttcatcttcactatccaaagaaaaattgaatgactttatttgattattttttcggtggtttccatcctctttcaatatccataagttctcgaaacc |
23502453 |
T |
|
| Q |
107 |
aagattgtgtatctaaaaaag |
127 |
Q |
| |
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|||||||| |||| ||||||| |
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| T |
23502452 |
aagattgtctatcaaaaaaag |
23502432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 1096497 - 1096556
Alignment:
| Q |
41 |
tgacttcatttgattctttttagggtgattgctctcttttttcaatatccatgagttctc |
100 |
Q |
| |
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||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||| |
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| T |
1096497 |
tgacttcatttgattcttttttgggtggttgctcatctttttcaatatccatgagatctc |
1096556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14337214 - 14337274
Alignment:
| Q |
1 |
tcttcctcttcttcatcttcactatccaacgaaatcggaatgacttcatttgattcttttt |
61 |
Q |
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||||| ||||||||||||| |||||||| | ||| |||||||||||||||||||||||| |
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| T |
14337214 |
tcttcgtcttcttcatctttcctatccaaaggaattagaatgacttcatttgattcttttt |
14337274 |
T |
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