View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_high_26 (Length: 225)
Name: NF3041_high_26
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 53635349 - 53635295
Alignment:
| Q |
19 |
aagtttccagtagtgacggcaatatacatataattaaaaagcattaaatgtattt |
73 |
Q |
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| T |
53635349 |
aagtttccagtagtgacggcaatatatatataattaaaaagcattaaatgtattt |
53635295 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 53633596 - 53633525
Alignment:
| Q |
19 |
aagtttccagtagtgacggcaatatacatataattaaaaagcattaaatgtatttcttacaaaaacataaata |
91 |
Q |
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| T |
53633596 |
aagtttcgactagtgaaggcaatatacatataattaagaagtattaaatgaattt-ttttaaaaacataaata |
53633525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 53635281 - 53635227
Alignment:
| Q |
61 |
attaaatgtatttcttacaaaaacataaatattcataatttttggttgttgtgtgc |
116 |
Q |
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| T |
53635281 |
attaaatgtatttcttac-aaaacataaatatacatcatagttggttgttgtgtgc |
53635227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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