View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_high_8 (Length: 385)
Name: NF3041_high_8
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 10161890 - 10161533
Alignment:
| Q |
18 |
catatatggaggcaacccctcgcttccaccaagctccgcaaggaagatctgaagggttttgtttgtcatctttggaagagttatttgacagtgataaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161890 |
catatatggaggcaacccctcgcttccaccaagctccgcaaggaagatctgaagggttttgtttgtcatctttggaagagttatttgacagtgataaatc |
10161791 |
T |
|
| Q |
118 |
atctggagatacctttgtctcctgctctgctgattcggttgtttcagactcaactacgttttcatcgtatgctgtcacagcaccaatgtctgtttcactg |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10161790 |
atcaggagatacctttgtctcctgctctgctgattcggttgtttcagactcaactacgttttcatcgtatgctgtcacaacaccaatgtctgtttcactg |
10161691 |
T |
|
| Q |
218 |
gggaaagaagtgtattttgcagggctatgatatatattttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgttttccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10161690 |
gggaaagaagtgtattttgcagggctatgatatatactttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactattttccat |
10161591 |
T |
|
| Q |
318 |
gaatagataatctgttgattttctcatcataatatttcatatcctcaaactccctttg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161590 |
gaatagataatctgttgattttctcatcataatatttcatatcctcaaactccctttg |
10161533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 29412290 - 29412642
Alignment:
| Q |
18 |
catatatggaggcaacccctcgcttccaccaagctccgcaaggaagatctgaagggttttgtttgtcatctttggaagagttatttgacagtgataaatc |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412290 |
catatatggaggcaactcctcgcttccaccaagctccgcaaggaagacctgaagggttttgtttgtcatctttggaagagttatttgacagtgataaatc |
29412389 |
T |
|
| Q |
118 |
atctggagatacctttgtctcctgctctgctgattcggttgtttcagactcaactacgttttcatcgtatgctgtcacagcaccaatgtctgtttcactg |
217 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29412390 |
atcaggagatacctttgtctcctgctctgctgattcggttgtttcagacccaactacgttttcattgtatgctgtcacagcaccaatgtctgtttcactg |
29412489 |
T |
|
| Q |
218 |
gggaaagaagtgtattttgcagggctatgatatatattttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgttttccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412490 |
gggaaagaagtgtattttgcagggctatgatatatactttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgttttccat |
29412589 |
T |
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| Q |
318 |
gaatagataatctgttgattttctcatcataatatttcatatcctcaaactcc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29412590 |
gaatagataatctgttgattttctcatcataatatttcatatcctcaaactcc |
29412642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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