View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_1 (Length: 641)
Name: NF3041_low_1
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_1 |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Original strand, 4092 - 4517
Alignment:
| Q |
12 |
atcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgtt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092 |
atcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgtt |
4191 |
T |
|
| Q |
112 |
gagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4192 |
gagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattttaagttcttatgattgactatatgcaata |
4291 |
T |
|
| Q |
212 |
ttttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4292 |
ttttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaa |
4391 |
T |
|
| Q |
312 |
catatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtttcaactatccatca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4392 |
catatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgttccaactatccatca |
4491 |
T |
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| Q |
412 |
ctgttattctcctatgataatgccat |
437 |
Q |
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| T |
4492 |
ctgttattctcctatgataatgccat |
4517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 433 - 626
Target Start/End: Complemental strand, 35777162 - 35776968
Alignment:
| Q |
433 |
gccatgatagtgtctctttctccttttccattgatggaatcgacaatt-acattctaatatcaaaataacccgatgttattatacaagtttcatccaatg |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35777162 |
gccatgatagtgtctctttctccttttccattgatggaatcgacaatttacattctaatatcaaaataacccgatgttattatacaagtttcatccaatg |
35777063 |
T |
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| Q |
532 |
acacacaaaagtgattaacatataaaataaagagggggaataaatgtgatgttattatttaagtttcattcaagagctataaatttacagtttgt |
626 |
Q |
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| T |
35777062 |
acacacaaaagcgattaacatataaaataaagagggggaataaatgtgatgttattatttaagtttcattcaagagctataaatttacagtttgt |
35776968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 35774380 - 35774168
Alignment:
| Q |
12 |
atcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtattttg |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||| | |||||||||||| ||| |||||||||| ||||||| |
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| T |
35774380 |
atcatcatacaataatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatattttg |
35774281 |
T |
|
| Q |
110 |
ttgagatg------caacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactat |
203 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| ||| |||||||| ||| ||||| |
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| T |
35774280 |
ttgagatgcgacatcgacatttctgttctattacttttagctaaactatttccacttaa----taaggtcttattaatgttagttcttaatattaactat |
35774185 |
T |
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| Q |
204 |
atgcaatattttatggg |
220 |
Q |
| |
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| |||||||||| |||| |
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| T |
35774184 |
aagcaatattttctggg |
35774168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 35773933 - 35773870
Alignment:
| Q |
447 |
tctttctccttttccattgatggaatcgacaattacattctaatat-caaaataacccgatgtt |
509 |
Q |
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||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
35773933 |
tctttctccttttgcatcgatggaatcgacaattacaatctaatataaaaaataaccagatgtt |
35773870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 35848161 - 35848122
Alignment:
| Q |
12 |
atcatcatacaataatttccagaagtttatcaaagaggtt |
51 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |
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| T |
35848161 |
atcatcatacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 102 - 141
Alignment:
| Q |
12 |
atcatcatacaataatttccagaagtttatcaaagaggtt |
51 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |
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| T |
102 |
atcatcatacaataatttccataagttaatcaaagaggtt |
141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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