View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_11 (Length: 375)
Name: NF3041_low_11
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_11 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 27824 - 28186
Alignment:
| Q |
15 |
tcattttcagtacagaatgttgtttttctcctcgtacaatgtagtgaagaatcttcctctccgtggttatcattgtagaatcctggtaaacatttgcaaa |
114 |
Q |
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| T |
27824 |
tcattttcagtacagaatgttgtttttctcctcgtacaatgtcgtgaagaatcttcctctccctggttatcattgtagaatcctggtaaacatttgcaaa |
27923 |
T |
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| Q |
115 |
cgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttcttggctgcttccatataactggcaaatcatcttccac |
214 |
Q |
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| T |
27924 |
cgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttcttggctgcttccatataactagcaaatcatcttccac |
28023 |
T |
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| Q |
215 |
ccactgtatcacacctgtggaattgaggaacaatcttttattgttatactgtttgttacgaattactgacctgttccgtttttcaggtgaactgaatttg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28024 |
ccactgtatcacacctgtggaattgaggaacaatcttttattgttatactgttcgttacgaattactgatctgttccgtttttcaggtgaactgaatttg |
28123 |
T |
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| Q |
315 |
tt--------------caagaaaactgaagttggtcaacaaattataaacctcaaagctgatg |
363 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28124 |
tttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctcaaagctgatg |
28186 |
T |
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