View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_12 (Length: 354)
Name: NF3041_low_12
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 47351529 - 47351845
Alignment:
| Q |
20 |
atcaattggtgttcgaatttttatttctaattttgtgaaaaataatagatgttgtcaattaatt-aattaaaggaatgtttgattctctcataaataaat |
118 |
Q |
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| T |
47351529 |
atcaattggtgttggaatttttatttctaattttgtgaaaaataatagatgttgtcaattaatttaattaaaggaatgtttgattctctcataaataaat |
47351628 |
T |
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| Q |
119 |
tgattgaacatatgccaattgtgtaaattgaaacaaaccattctattctatcacaaaattgctacaaacacagtatcatttcttccgtatcggattaaat |
218 |
Q |
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| T |
47351629 |
tgattgaacatatgccaattgtgtaaattgaaacaaaccattc-----tatcacaaaattgctacaaacacagtatcatttcttccttatcggattaaat |
47351723 |
T |
|
| Q |
219 |
gtcatatttgagttatatatgattgttaagaaaataatttacacaatgaatttcaattgtataaaattagtttcattggctaaaacacttttattaattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47351724 |
gtcatatttgagttatatatgattgttaagaaaataatttacagaatgaatttcaattgtataaaattagtttcattggctaaaacacttttattaattg |
47351823 |
T |
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| Q |
319 |
aagataacgaagtagtagttaa |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
47351824 |
aagataacgaagtagtagttaa |
47351845 |
T |
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