View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_14 (Length: 336)
Name: NF3041_low_14
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 29412664 - 29412990
Alignment:
| Q |
1 |
aatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattctgaatctcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412664 |
aatgtcaagttttcttcatcctttccactaggcttggatgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattctgaatctcac |
29412763 |
T |
|
| Q |
101 |
tatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttcgatgtctcagcttcatttattgc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29412764 |
tatagtccttttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttcgatgtctcagcttcatttattgc |
29412863 |
T |
|
| Q |
201 |
gtatgcatcttccttgtcatcatccttcaattcaacttcacgtggaccaggagcagctgcataagttgatgctgtgagagatacaacctcccagtcatta |
300 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412864 |
gtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagcagctgcataagttgatgctgtgagagatacaacctcccagtcatta |
29412963 |
T |
|
| Q |
301 |
ccgcgagaagacttgtccccttcatct |
327 |
Q |
| |
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| |||||||||||| |||||||||||| |
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| T |
29412964 |
ctgcgagaagacttttccccttcatct |
29412990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 10161515 - 10161191
Alignment:
| Q |
1 |
aatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattctgaatctcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10161515 |
aatgtcaagttttcttcatcctttccactaggcttggctgcttcttcataagtctcttcaaaggcaacacctttgtctccggattcattatgaatctcac |
10161416 |
T |
|
| Q |
101 |
tatagtccatttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagtgttcgatgtctcagcttcatttattgc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
10161415 |
tatagtctgtttccaatggcaagttttcatgcttacttggtggaaaggcgaagtgaccagacatgaacaaagcgttcgatgtctcagcttcatttattgc |
10161316 |
T |
|
| Q |
201 |
gtatgcatcttccttgtcatcatccttcaattcaacttcacgtggaccaggagcagctgcataagttgatgctgtgagagatacaacctcccagtcatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
10161315 |
gtatgcatcttccttgtcatcatccttcaactcaacttcacgtggaccaggagtagctgcataagttgatgttgtgagagatacaacctcccagtcatta |
10161216 |
T |
|
| Q |
301 |
ccgcgagaagacttgtccccttcat |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
10161215 |
ccgcgagaagacttgtccccttcat |
10161191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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