View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_21 (Length: 251)
Name: NF3041_low_21
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8204019 - 8204119
Alignment:
| Q |
1 |
taacttgatgcaacattacattgcatgtagggatatggggcatgagggaagctaatatggatggagaagagtacaagataaaaaagttatatataactct |
100 |
Q |
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| T |
8204019 |
taacttgatgcaacattacattgcatgtagggatatggggcatgagggaagctaatatggatggagaagagtacaagataaaaaagttatatataactct |
8204118 |
T |
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| Q |
101 |
a |
101 |
Q |
| |
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| |
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| T |
8204119 |
a |
8204119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 8205986 - 8206104
Alignment:
| Q |
120 |
tctactccaaattgaagtactactctaattattataggggtaatggtaannnnnnncgttgaatgtgtaataaatagttataatagttttttaatgtata |
219 |
Q |
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| T |
8205986 |
tctactccaaattgaagtactactctaattattataggggtaatggtattttttatcgttgaatgtgtaataaatatttataatagttctttaatgtata |
8206085 |
T |
|
| Q |
220 |
aaaaattttaaagtagtct |
238 |
Q |
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|||||||||||| |||||| |
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| T |
8206086 |
aaaaattttaaaatagtct |
8206104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 8204283 - 8204318
Alignment:
| Q |
93 |
ataactctatattcgaattaactagtatctactcca |
128 |
Q |
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| T |
8204283 |
ataactctatattcgaattaactggtatctactcca |
8204318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 9471880 - 9471836
Alignment:
| Q |
179 |
tgaatgtgtaataaatagttataatagttttttaatgtataaaaa |
223 |
Q |
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| T |
9471880 |
tgaatgtgtaataaatagtcataatagttttttaatgtattaaaa |
9471836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 7672355 - 7672400
Alignment:
| Q |
178 |
ttgaatgtgtaataaatagttataatagttttttaatgtataaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||| |
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|
| T |
7672355 |
ttgaatgtgtaataaatagttataataatcttttaatgtattaaaa |
7672400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 23567100 - 23567136
Alignment:
| Q |
180 |
gaatgtgtaataaatagttataatagttttttaatgt |
216 |
Q |
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| T |
23567100 |
gaatgtgtaataaataattataatagttctttaatgt |
23567136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 34209645 - 34209677
Alignment:
| Q |
204 |
agttttttaatgtataaaaaattttaaagtagt |
236 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
34209645 |
agttttttaatgtataaaaaattttaaaatagt |
34209677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 38932654 - 38932711
Alignment:
| Q |
179 |
tgaatgtgtaataaatagttataatagttttttaatgtataaaaaattttaaagtagtc |
237 |
Q |
| |
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||||||||||||||||||| |||||||| ||| ||||||| ||||||||||| ||||| |
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| T |
38932654 |
tgaatgtgtaataaatagtcataatagtgtttcaatgtat-taaaattttaaaatagtc |
38932711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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