View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_23 (Length: 249)
Name: NF3041_low_23
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 22933383 - 22933623
Alignment:
| Q |
1 |
caatagtttgaggtcaaatgcttctgttcctgctggttattacactgataattcaaccaaacaagatcttaatattaaaagtgggaaaccaattcttgtt |
100 |
Q |
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| T |
22933383 |
caatagtttgaggtcaaatgcttctgttactgctggttattacactgataattcaaccaaacaagatcttaatattaaaagtgggaaaccaattcttgtt |
22933482 |
T |
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| Q |
101 |
tgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaactaaaccgaaaaaaccgatcttgtcctttcatgtggatctat |
200 |
Q |
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| T |
22933483 |
tgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaattaaaccgaaaaaaccgatcttgtcctttcatgtggatctat |
22933582 |
T |
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| Q |
201 |
ctcctatttttcatgatactatgtatgttggtttctctgct |
241 |
Q |
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| T |
22933583 |
ctcctatttttcatgatactatgtatgttggtttctctgct |
22933623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 22922136 - 22921968
Alignment:
| Q |
73 |
tattaaaagtgggaaaccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaactaaaccgaaaaaa |
172 |
Q |
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| T |
22922136 |
tattaaaggtggaaaaccaattttagtttgggttgattatgattcttcattggaacttattagtgttacactttcaccaacttctaataagcctaaaaaa |
22922037 |
T |
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| Q |
173 |
ccgatcttgtcctttcatgtggatctatctcctatttttcatgatactatgtatgttggtttctctgct |
241 |
Q |
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| T |
22922036 |
cctattttgacttttcatatggatctatcacctctttttcttgatactatgtatgttggtttctctgct |
22921968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 15628227 - 15628047
Alignment:
| Q |
60 |
aacaagatcttaatattaaaagtgggaaaccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaac |
159 |
Q |
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||||| ||||| |||| |||||||||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
15628227 |
aacaacatcttgatatcaaaagtgggaaaccaattctagcttgggttgattatgattcttcaataaatcttgttagtgttacactttctccaacttcaac |
15628128 |
T |
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| Q |
160 |
taaaccgaaaaaaccgatcttgtcctttcatgtggatctatctcctatttttcatgatactatgtatgttggtttctctgc |
240 |
Q |
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| T |
15628127 |
aaaaccaaaaaaaccaactttgtcctttcataccgatctatcgcctatttttcatgatactatgtatgttggattctctgc |
15628047 |
T |
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