View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3041_low_28 (Length: 227)

Name: NF3041_low_28

Description: NF3041

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3041_low_28

[»] chr8 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 197; E-Value: 1e-107

Query Start/End: Original strand, 1 - 225

Target Start/End: Complemental strand, 9600960 - 9600737

Alignment:

Q	1	accaatgagaaatcagggatggccagaattcacggaagggttgcattatatttggaaatcaacaaataatgttgtgaatcaaatacacagtcaggataaa	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	9600960	accaatgagaaatcagggatggccagaattcacggaagggttgcattatatttggaaatcaacaaataatgctctgaatcaaatacacagtcgggataaa	9600861	T

Q	101	atcgcgagattctttctcgtgataaatagtattttcgaaaagacatatattcatataatgttagtaagatattggacacaaaacaaaaaatggtggtgca	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	9600860	atcgcgagattctttctcgtgataaatagcattttcgaaaagacatatattcatataatgttagtaagatattggacacaaaa-aaaaaatgttggtgca	9600762	T

Q	201	ttatcgaccacataaaatatgttcg	225	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9600761	ttatcgaccacataaaatatgttcg	9600737	T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 48 - 128

Target Start/End: Complemental strand, 49974737 - 49974658

Alignment:

Q	48	atatttggaaatcaacaaataatgttgtgaatcaaatacacagtcaggataaaatcgcgagattctttctcgtgataaata	128	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49974737	atatttgaaaatcaacaaataaagcggtgaatcaaatacatagtcgggataaatttacgagatt-tctctcgtgataaata	49974658	T

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