View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_3 (Length: 570)
Name: NF3041_low_3
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 570
Target Start/End: Original strand, 32068567 - 32069126
Alignment:
| Q |
17 |
aatctgaaggtgctgattttcttatatatggcggcggcggcggtggtggtgatctggaacttttaaatcaggaaattggtaatgtagttgacaatgtcaa |
116 |
Q |
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| T |
32068567 |
aatctgaaggtgctgattttcttatatatggcggtgg------tggtggtgatctggaacttttaaatcaggaaattggtaatgtagttgacaatgtcaa |
32068660 |
T |
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| Q |
117 |
gataccgatttttgcttcttttatggggaaaaacttgtcatatggtgaggcttcaagtttacttgcttctggtgctagtggttttgttactagtttggaa |
216 |
Q |
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| T |
32068661 |
gataccgatttttgcttcttttatggggaaaaacttgtcatatggtgaggcttcgagtttacttgcttctggtgctagtggttttgttactagtttggaa |
32068760 |
T |
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| Q |
217 |
agttttgggttgttcgatgatgatttccagagaacactggatgatcgtcgtgataaaattgatgatgataataaattagtcaatgagag----------- |
305 |
Q |
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| T |
32068761 |
agttttgggttgttcgatgatgatttccagagaacactggatgatcgtcgtgataaaattgatgatgataa---attagtcaatgagagtaatggtttac |
32068857 |
T |
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| Q |
306 |
----tataacagagattgtgggtggatttgttaaactggaggatagggagaaacagttaatagaaatggagaggtcggtgttgaatgaagcaattgaagt |
401 |
Q |
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| T |
32068858 |
agagtataacagaggttgtgggtggatttgttaaactggaggatagggagaaacggttaatagaaatggagaggtcggtgttgaatgaagcaattgaagt |
32068957 |
T |
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| Q |
402 |
tataaagaaagctgcacctctggtgatcttttaactaaaacagttggtatttgaaatgatattttatgnnnnnnncattattatgtattttgaccagtat |
501 |
Q |
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| T |
32068958 |
tataaagaaagctgcacctctggtgatcttttaactaaaacagttggtatttgaaatgatattttatgtttttttcattattatgtattttgaccagtat |
32069057 |
T |
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| Q |
502 |
attgtttactttttgttgaattgggattggtttcaaatgacagatggaggaagtttcgcttcttgatga |
570 |
Q |
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| T |
32069058 |
attgtttactttttgttgaattgggattggtttcaaatgacagatggaggaagtttcgcttcttgatga |
32069126 |
T |
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