View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3041_low_4 (Length: 522)

Name: NF3041_low_4
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3041_low_4
NF3041_low_4
[»] chr3 (58 HSPs)
chr3 (12-505)||(2476580-2477073)
chr3 (16-505)||(7324043-7324532)
chr3 (12-501)||(2635670-2636157)
chr3 (19-505)||(9565442-9565927)
chr3 (50-505)||(754222-754676)
chr3 (17-371)||(2644102-2644462)
chr3 (7-505)||(2631298-2631801)
chr3 (28-371)||(9561731-9562074)
chr3 (22-470)||(7442627-7443072)
chr3 (12-449)||(7333927-7334344)
chr3 (17-458)||(2492033-2492491)
chr3 (17-477)||(2658787-2659252)
chr3 (383-505)||(767883-768005)
chr3 (228-505)||(9594219-9594495)
chr3 (228-371)||(2502364-2502507)
chr3 (315-496)||(7318533-7318715)
chr3 (11-140)||(9594601-9594730)
chr3 (228-323)||(768120-768215)
chr3 (441-505)||(7442562-7442626)
chr3 (18-140)||(7942437-7942559)
chr3 (383-448)||(666829-666894)
chr3 (228-283)||(666992-667047)
chr3 (53-120)||(13498211-13498278)
chr3 (87-185)||(746315-746413)
chr3 (11-117)||(768329-768435)
chr3 (58-128)||(37753334-37753404)
chr3 (24-121)||(2502106-2502203)
chr3 (50-118)||(43991944-43992012)
chr3 (52-119)||(2456235-2456302)
chr3 (50-120)||(14888609-14888679)
chr3 (59-120)||(7430533-7430594)
chr3 (51-120)||(9587182-9587251)
chr3 (65-117)||(2442038-2442090)
chr3 (66-134)||(4142117-4142185)
chr3 (52-119)||(771497-771564)
chr3 (66-117)||(803218-803269)
chr3 (66-117)||(2678399-2678450)
chr3 (66-117)||(2696732-2696783)
chr3 (66-117)||(3754600-3754651)
chr3 (66-117)||(4157944-4157995)
chr3 (230-285)||(43992127-43992182)
chr3 (66-140)||(989396-989470)
chr3 (50-119)||(1437980-1438048)
chr3 (68-117)||(2459277-2459326)
chr3 (228-285)||(7942650-7942707)
chr3 (54-134)||(783782-783862)
chr3 (66-118)||(1891063-1891115)
chr3 (52-120)||(9608341-9608409)
chr3 (23-82)||(747179-747238)
chr3 (50-148)||(37757705-37757803)
chr3 (228-285)||(771325-771382)
chr3 (228-285)||(2456414-2456471)
chr3 (228-281)||(9587018-9587071)
chr3 (416-500)||(13498563-13498648)
chr3 (421-465)||(1438366-1438410)
chr3 (309-337)||(9586959-9586987)
chr3 (308-371)||(9608074-9608138)
chr3 (228-284)||(12218192-12218248)
[»] chr2 (7 HSPs)
chr2 (22-285)||(33020269-33020535)
chr2 (22-148)||(33038116-33038242)
chr2 (53-119)||(33026644-33026710)
chr2 (56-134)||(34560900-34560978)
chr2 (66-117)||(36577366-36577417)
chr2 (228-285)||(33026825-33026882)
chr2 (228-285)||(33038357-33038414)
[»] chr4 (3 HSPs)
chr4 (228-340)||(41456255-41456367)
chr4 (70-140)||(20016162-20016232)
chr4 (66-140)||(20019749-20019823)
[»] chr5 (13 HSPs)
chr5 (66-117)||(23766862-23766913)
chr5 (66-117)||(23816710-23816761)
chr5 (22-120)||(20292951-20293049)
chr5 (22-120)||(20301399-20301497)
chr5 (22-120)||(20305812-20305910)
chr5 (22-120)||(20310216-20310314)
chr5 (66-117)||(11081813-11081864)
chr5 (304-371)||(20301675-20301743)
chr5 (304-371)||(20306088-20306156)
chr5 (304-371)||(20310492-20310560)
chr5 (66-117)||(23769646-23769697)
chr5 (66-117)||(23819494-23819545)
chr5 (304-340)||(20293228-20293264)
[»] scaffold0044 (2 HSPs)
scaffold0044 (50-140)||(89127-89217)
scaffold0044 (231-336)||(89311-89416)
[»] chr6 (4 HSPs)
chr6 (67-120)||(24417483-24417536)
chr6 (60-117)||(370785-370842)
chr6 (64-117)||(1459541-1459594)
chr6 (64-117)||(1470923-1470976)
[»] scaffold0097 (2 HSPs)
scaffold0097 (201-284)||(34138-34221)
scaffold0097 (331-439)||(34231-34336)
[»] chr1 (1 HSPs)
chr1 (70-117)||(51381455-51381502)
[»] chr7 (3 HSPs)
chr7 (228-285)||(39299142-39299198)
chr7 (65-117)||(1078160-1078212)
chr7 (56-140)||(39298967-39299051)
[»] scaffold0015 (1 HSPs)
scaffold0015 (60-116)||(32330-32386)


Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 12 - 505
Target Start/End: Original strand, 2476580 - 2477073
Alignment:
12 ttggatgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggacta 111  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2476580 ttggatgtagtgagggattgcttgtgtatctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggacta 2476679  T
112 aattgtacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttattgagat 211  Q
    |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||    
2476680 aattgtacactgttcctaacatgcaagatcggggtttagaagcctacaatgctttatacatttctgaggatgaccaactgttggtcgagtgtcttgagat 2476779  T
212 tgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtc 311  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
2476780 tgaaagtgacaatgataagttggttgtttacgattccaaaactggtacttcgaatattcctgagtttcaaaacaaatatgacctgatatactcaaatgtc 2476879  T
312 tacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgagt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||    
2476880 tacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagttttctttgttgtgttatttattttatgcctgctttgagt 2476979  T
412 cttggtgatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgcttttatttacaatagtttggttagtttgagtt 505  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
2476980 cttggttatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgcttttattttcaatagtttggttagtttgagtt 2477073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 505
Target Start/End: Complemental strand, 7324532 - 7324043
Alignment:
16 atgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaatt 115  Q
    ||||||||||||||||| |  || ||| || | || ||||||||| | |||||||||||||||||||  |||| ||||||||||||||||||||||||||    
7324532 atgtggtgagggattgccttggtctctttggaactggtgatatgtctttggatgtttggattatgaaggactacggaaataaagagtcttggactaaatt 7324433  T
116 gtacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttattgagattgaa 215  Q
    ||| |  |||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||| ||||| || | |||||||||||||    
7324432 gtatagtgttcctaacatgcaagatcgcggtttagaagcctacgatgctttatacatttctgaggatgaccaacttttggtcgattgtattgagattgaa 7324333  T
216 agtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctaca 315  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | ||||| | ||||||||||||    
7324332 agtggcaatgataagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctaca 7324233  T
316 ttgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgagtcttg 415  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||         | ||||| ||| ||||| ||||||| ||| | |||    
7324232 ttgagagtttgatatcaccttaagctgggattcaactgcaacatatatatggttagtttttgt--ttgtgttgtttgttttacgcctgctctgatttttg 7324135  T
416 gtgatttgttggatcattgttaatc-aatggttgatggaatctata-ggttgaacattgcttttatttacaatagtttggttagtttgagtt 505  Q
     ||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||  ||||||||| ||  |||||| ||| ||||||||    
7324134 ttgacttgttggatcattgttaatctaatggttgatggaatctatagggttgaaaatgacttttattttcatcagtttgattaatttgagtt 7324043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 12 - 501
Target Start/End: Original strand, 2635670 - 2636157
Alignment:
12 ttggatgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggacta 111  Q
    ||||||||| ||||| ||||| ||||||||| |||| |||||||| ||||| ||||||||||||||||| |    ||||||| | |||||||||||||||    
2635670 ttggatgtgatgaggaattgcatgtgtgtctttgcaactagtgatgtgtttttggatgtttggattatggag---tatggaagtgaagagtcttggacta 2635766  T
112 aattgtacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttattgagat 211  Q
    |||||||||  ||||||||||||||| || |||||||||||  ||| || |||||||| ||||||||| ||||||||||  |  |  ||| |  ||||||    
2635767 aattgtacagtgttcctaacatgcaacatcggggtttagaagtctataaagctttatatatttctgaggatgaccaactactcctgcagtgttatgagat 2635866  T
212 tgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtc 311  Q
    |||||||||  ||   ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||  | ||||||| ||||||||    
2635867 tgaaagtggagatatgaagttggttgtttacgattccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtc 2635966  T
312 tacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttattta--ttttatgcctgctttga 409  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||           ||||||||||  | ||||||||  | |||    
2635967 tacattgcgagtttgatatcaccttaagttgggattcatctgcaacatatatatggttagtttttgtc--tgtgttatttatgtattatgcctaatctga 2636064  T
410 gtcttggtgatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgc-ttttatttacaatagtttggttagtttg 501  Q
     ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||    
2636065 ttcttggtgacttgttagatcattgttaatcaatggttgatggaatctataggttgaacattgctttttattttcagtagtttggttaatttg 2636157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 9565927 - 9565442
Alignment:
19 tggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgta 118  Q
    ||||||||| |||||||||||||| ||||  ||||||||||| |||||||||||||||||||||  | || ||| || ||||||||||||||||||||||    
9565927 tggtgaggggttgcttgtgtgtctttgcaagtagtgatatgtatatggatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgta 9565828  T
119 cacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttattgagattg-aaag 217  Q
    ||  ||||||||||| ||||||  |||| |  || |||| || |||||||| ||||||||  |||||||||||||||| |||||||  || |||| ||||    
9565827 cattgttcctaacatacaagatcagggtgtcaaagcctataaagctttatatatttctgacgatgaccaactgttggtagagtttaa-gaaattgcaaag 9565729  T
218 tggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacatt 317  Q
    |  || |   |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||   | | ||  ||||||||||||||||    
9565728 taacagtatcaagttggttgtttatgattccaagaccggtactttgaatattcctgagtttcaaaacaactataaacaggtagcctcaaatgtctacatt 9565629  T
318 gagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgagtcttggt 417  Q
    |||||||||||||||||||| ||  |||||||| | ||||||  ||||||||||         || |||||||||||||||| ||| ||||| |||||||    
9565628 gagagtttgatatcaccttaggcacggattcaaatgcaacattgatatggttagtttttttactg-tgttatttattttatgtctgatttgattcttggt 9565530  T
418 gatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgcttttatttacaatagtttggttagtttgagtt 505  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
9565529 gatttgttggatcattgctaatcaatggttgagggaatctataggttggacattgcttttattttcaatagtatggttaatttgagtt 9565442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 50 - 505
Target Start/End: Complemental strand, 754676 - 754222
Alignment:
50 tagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagattggggttta 149  Q
    |||||||||||||||||||||||||||||||||  | |||||| || ||||||||||||||||||||||||  |||||  |||| ||||||   ||| |     
754676 tagtgatatgtttatggatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgtacattgttcccgacatacaagatcatggtctc 754577  T
150 gaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttattgagattgaaagtggcaatgataagttggttgtttacgattcca 249  Q
     ||||||   |  ||||||| |||| |||| ||||||||||| || |   ||||  ||  || ||| |||| |||   |||||||||||||| |||||||    
754576 aaaccctttcaacctttatatatttatgaggatgaccaactgctgctaaggttttatgcaatggaaggtggaaatatcaagttggttgtttatgattcca 754477  T
250 aaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgagagtttgatatcaccttaagctgggattca 349  Q
    | ||||||||| ||||||||||||||||||||||||| ||||  |  |||  |||| ||||||||||||||||||||||||||||||||||  |||||||    
754476 agactggtactctgaatattcctgagtttcaaaacaactatgaacaaataggctcagatgtctacattgagagtttgatatcaccttaagcaaggattca 754377  T
350 actccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgagtcttggtgatttgttggatcattgttaatcaatggttga 449  Q
    ||| ||||||||| ||||||||         | ||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||    
754376 actgcaacatatacatggttagtttttgta-ttgtgttatttattttatgtctgatttgattcttggtgatttgttggatcattgctaatcaatggttga 754278  T
450 tggaatctataggttgaacattgcttttatttacaatagtttggttagtttgagtt 505  Q
     ||||||||||||||| ||||| ||||||||| ||||||| |||||| ||||||||    
754277 gggaatctataggttggacattacttttattttcaatagtatggttaatttgagtt 754222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 2644462 - 2644102
Alignment:
17 tgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattg 116  Q
    |||| ||||||||||||||||||||| |||| ||||||||   | | |||||||||||||||||||  | ||||||||| ||||||||||||||||||||    
2644462 tgtgttgagggattgcttgtgtgtctttgcaactagtgatgaatatttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattg 2644363  T
117 tacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagttt------attgaga 210  Q
    |||||  |||||||| ||||||||  |  |||  || ||   |  |||||||| ||||| ||| |||||||||||||||| |||| |      ||||||     
2644362 tacactattcctaacctgcaagatcagaatttgaaagccagtagagctttatatatttcagaggatgaccaactgttggtggagtgttgtgaaattgagg 2644263  T
211 ttgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgt 310  Q
     ||||| |||| ||   |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||    
2644262 gtgaaactggctatatcaagttggttgtttatgattccaaaactggcacattgaatattcctgagtttcaaaacaaatatgacctgatatactcaaatgt 2644163  T
311 ctacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttag 371  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
2644162 ctacattgagagtttgatatcaccttaagctgggattcaactgcaacatatatatggttag 2644102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 7 - 505
Target Start/End: Original strand, 2631298 - 2631801
Alignment:
7 ggacgttggatgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttg 106  Q
    |||| |||| |||| |||| |||| ||||||||||| |||| |||||||||||||| || ||||||||||||||||  | ||||||||| ||||||||||    
2631298 ggacattgggtgtgctgagtgattacttgtgtgtctttgcaactagtgatatgtttttgaatgtttggattatgaaggaatatggaaatcaagagtcttg 2631397  T
107 gactaaattgtacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttatt 206  Q
    ||||||||||| ||  |||||| ||||||| |||   |||||  || | |     ||| |||| ||||||||| |||| |||||| |  |  ||| |       
2631398 gactaaattgtgcagtgttcctgacatgcacgatcacggtttccaagcatctgccgctgtatatatttctgaggatgatcaactgctcttgcagtgttac 2631497  T
207 gagattgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaa 306  Q
    ||| |||| |||||| | || ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||  |  |||| |  ||    
2631498 gagtttgacagtggcgaggagaagttggttgtctacgattccaaaactggtatttttaatattcttgagtttcaaaacaactatgaacatatatcccaaa 2631597  T
307 atgtctacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgtta-----tttattttatgcc 401  Q
    | ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||         |  |||||     ||||||||||| |    
2631598 aagtctacattgagagtttaatatcaccttaagctgggattcaactgcaacatatacatggttagttttatgt-ttatgttatttattttattttatgtc 2631696  T
402 tgctttgagtcttggtgatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgc-ttttatttacaatagtttggttagttt 500  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||| |||    
2631697 tgctttgattcttagtgacttgttggatcattgttaatcaatggttgatggaatctgtaggttgaaaattgctttttattttcaatagtttggttaattt 2631796  T
501 gagtt 505  Q
    |||||    
2631797 gagtt 2631801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 28 - 371
Target Start/End: Complemental strand, 9562074 - 9561731
Alignment:
28 attgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcc 127  Q
    ||||||||||| |||  ||  ||||| || ||||| |||||||||||||||||||  | ||||||||| ||||||||||||||||||| ||||  |||||    
9562074 attgcttgtgtatcttagctactagtaatttgtttttggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcc 9561975  T
128 taacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttattgagattgaaagtggcaatgat 227  Q
    |||||||||||||   ||||||||| | || | || |||||| | ||||||| ||||||||||| || | ||||||| ||||||   ||||| ||| |      
9561974 taacatgcaagatcacggtttagaagcttatactgttttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtg 9561875  T
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgagagtttga 327  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||  | ||||| |  |||| ||||||||||||||||||    
9561874 aagttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagtttga 9561775  T
328 tatcaccttaagctgggattcaactccaacatatatatggttag 371  Q
    |||||||||||||   ||||||||| ||||||||||||||||||    
9561774 tatcaccttaagcattgattcaactgcaacatatatatggttag 9561731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 22 - 470
Target Start/End: Complemental strand, 7443072 - 7442627
Alignment:
22 tgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacac 121  Q
    ||||||||||||||||||||| || |||||||||| ||||| |  |||||||||| |||||  | ||||||||| |||||||||||||||| ||||| |     
7443072 tgagggattgcttgtgtgtctatgaagctagtgatttgttttttaatgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgtatag 7442973  T
122 ggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagtttattgagattgaaagtggc 221  Q
     |||||||| |||||| || || ||||  || |||| | |  || ||| || | |||| ||||||||||| || | | | || |||| ||  ||||| ||    
7442972 tgttcctaaaatgcaacatcggcgttttaaagcctatactatttcatatatctatgaggatgaccaactgctgttggggattgttgatatgcaaagtagc 7442873  T
222 aatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgaga 321  Q
    |||   ||||||| |||||| |||||||| || |||||||||||||||||||||||| |||| |  ||||  | ||||||||||||||||||||||||||    
7442872 aatacaaagttggctgtttatgattccaagacgggtactttgaatattcctgagtttgaaaaaacctatgaaccgatatactcaaatgtctacattgaga 7442773  T
322 gtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgagtcttggtgatt 421  Q
    |||||||||| || ||||||||||||||||  ||||||||||||||||||         | |||||||||||||||   |   | ||| | || |||| |    
7442772 gtttgatatcgccctaagctgggattcaacggcaacatatatatggttagtttttttatttgtgttatttatttta---cacatctgattttttgtgact 7442676  T
422 tgttggatcattgttaatcaatggttgatggaatctataggttgaacat 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
7442675 tgttggatcattgttaatcaatggttgatggaatctataggttgaacat 7442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 7334344 - 7333927
Alignment:
12 ttggatgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggacta 111  Q
    |||||| |||||||||||||||||||||||| |||   ||||||||| | |  |||||||||||| |||||  |||| ||||||||||||||||||||||    
7334344 ttggatatggtgagggattgcttgtgtgtctttgccagtagtgatatatattgggatgtttggatcatgaaggactacggaaataaagagtcttggacta 7334245  T
112 aattgtacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagt-ttattgaga 210  Q
    ||||||||||  |||||||| || ||||| | ||||||||| || |   |  |||||| ||||| ||| |||||||||||||||| |||| ||||         
7334244 aattgtacactattcctaacctgaaagatcgtggtttagaagccgattctcttttatatatttcagaggatgaccaactgttggtggagtgttat----- 7334150  T
211 ttgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgt 310  Q
               || ||   |||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||| |||   |||||| ||||||||||    
7334149 -----------aacga---gttggttgtttatgatcccaaaactggtactttaaatatccctgagtttcaaaacaactataaactgatagactcaaatgt 7334064  T
311 ctacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgag 410  Q
    ||||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||         | |||||||||||||||| ||||||||||     
7334063 ctacattgagagtttgatatcgccctaagctgggattcaacggcaacatatatatggttagtttttat--ttgtgttatttattttatccctgctttgat 7333966  T
411 tcttggtgatttgttggatcattgttaatcaatggttga 449  Q
    | ||  ||| ||||| |||||||||||||||||||||||    
7333965 tattcatgacttgttagatcattgttaatcaatggttga 7333927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 2492033 - 2492491
Alignment:
17 tgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattg 116  Q
    |||| ||||||||||||||||||| | |||| ||| ||||| | || || ||||||||||||||||  | |||||||||  |||||||||||||||||||    
2492033 tgtgctgagggattgcttgtgtgtttttgcaactattgataggattttgaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattg 2492132  T
117 tacacggttcctaacatgcaagattggggtttaga------------------accctacaatgctttatacatttctgagtatgaccaactgttggttg 198  Q
    || |  |||||||||||||||||| ||||||||||                  |||||| | || || ||| ||||||||| ||||||||||| |||| |    
2492133 tatagtgttcctaacatgcaagatcggggtttagacgcctatgaagatctcgaaccctatactgtttcatatatttctgaggatgaccaactgctggtgg 2492232  T
199 agtttattgagattgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgat 298  Q
     |||| || |  || ||||| ||| |   |||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||| ||||  | |      
2492233 ggttttttcattttcaaagtcgcattaggaagttggttgtttatgattccaagactgatactttgaatattccagagtttcaaaacaactatgaaccgga 2492332  T
299 atactcaaatgtctacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtg-gtgttatttatttta 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||        ||| |||||||||||||||    
2492333 atactcaaatgtctacattgagagtttgatatcaccttaagctgggattcaactgcggcatatatatggttag---tttttgtgtgtgttatttatttta 2492429  T
398 tgcctgctttgagtcttggtgatttgttggatcattgttaatc-aatggttgatggaatcta 458  Q
     || |||| ||| | ||  ||| |||||||||||||||||||| ||||||| ||||||||||    
2492430 cgcatgctctgatttttcttgacttgttggatcattgttaatctaatggttaatggaatcta 2492491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 2659252 - 2658787
Alignment:
17 tgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattg 116  Q
    |||||||||||||||||||||||||| ||||  |||||||   | |  ||||||||||||||||||  | ||||||||| ||||||||||||||||||||    
2659252 tgtggtgagggattgcttgtgtgtctttgcaagtagtgatgaatattgggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattg 2659153  T
117 tacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgaccaactgttggttgagt-ttattgagat---- 211  Q
    |||||  |||||||| ||||||||  || ||||||| || | |  |||||||| ||||| ||| |||||||||| |||||  | | | ||   |||        
2659152 tacactattcctaacctgcaagatcaggatttagaagccgatagagctttatatatttcagaggatgaccaactattggtacaatgtcatcaggattggg 2659053  T
212 -tgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgt 310  Q
     |||| ||| | ||   |||||||||||||| ||||| ||| |||| || |||||| |||||| ||||| |||||| |||   |  | | |  |  | ||    
2659052 ctgaatgtgacgatatgaagttggttgtttatgattctaaagctggcacattgaattttcctgtgtttcgaaacaactataaacatacacatgccgaagt 2658953  T
311 ctacattgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatt--tattttatgcctgctttg 408  Q
    ||||||||||||| | ||||||||||||||   ||||||||| ||||||||||||||||||         | ||||||||  ||| ||||||||||| ||    
2658952 ctacattgagagtctcatatcaccttaagcattgattcaactgcaacatatatatggttagtttttgt--ttgtgttatttatatgttatgcctgctctg 2658855  T
409 agtcttggtgatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgctttt 477  Q
    | | ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
2658854 a-ttttggtgacttgttagatcattgttaattaatggttgatggaatctataggttgaacattgctttt 2658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 383 - 505
Target Start/End: Complemental strand, 768005 - 767883
Alignment:
383 gtgttatttattttatgcctgctttgagtcttggtgatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgcttttattta 482  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||     
768005 gtgttatttattttatatctgctttgattcttggtgatttgttggatcattgttaatcaatggttgatggaatatataggttcaacattgttttaatttt 767906  T
483 caatagtttggttagtttgagtt 505  Q
    |||||||||||||| ||||||||    
767905 caatagtttggttaatttgagtt 767883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 228 - 505
Target Start/End: Complemental strand, 9594495 - 9594219
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgagagtttga 327  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||||||| | ||  | ||   || |||  ||||||||||||||| | |    
9594495 aagttggctgtttacgattccaaaactgttacttttaatattcttgagtttcaaaacaactgtgctcagaagcacccaatagtctacattgagagtctca 9594396  T
328 tatcaccttaa------gctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgagtcttggtgatt 421  Q
    |||||||||||      ||  | |||| ||| ||| ||| ||||||||||            |||| |||| |||||| ||||||||| ||||||||| |    
9594395 tatcaccttaacttaaagcatgcattcgacttcaatatacatatggttagttgtt-------tgttgtttaatttatgtctgctttgattcttggtgaat 9594303  T
422 tgttggatcattgttaatcaatggttgatggaatctataggttgaacattgctt-ttatttacaatagtttggttagtttgagtt 505  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||    
9594302 t-ttggatcattgttaatcaatggttgatggaatctataggttcaacattgcttcttattttcaatagtttggttaatttgagtt 9594219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 228 - 371
Target Start/End: Original strand, 2502364 - 2502507
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgagagtttga 327  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||  |  | | |  ||| | ||||||||||||||||||    
2502364 aagtttgttgtttatgattccaaaactggcactttgaatattcctgagtttcaaaacaactatgagcatagagatgcaattttctacattgagagtttga 2502463  T
328 tatcaccttaagctgggattcaactccaacatatatatggttag 371  Q
    |||||||||||||  |||||||||| ||||||||||||||||||    
2502464 tatcaccttaagcatggattcaactgcaacatatatatggttag 2502507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 496
Target Start/End: Complemental strand, 7318715 - 7318533
Alignment:
315 attgagagtttgatatcaccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatt--tattttatgcctgctttgagtc 412  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||         | ||||||||  ||| ||||||||||| ||| ||    
7318715 attgagagtttaatatcaccttaagctgggattcaactgcaacatatatatggttagttttttgt-ttgtgttatttatatgttatgcctgctctgattc 7318617  T
413 ttggtgatttgttggatcattgttaatcaatggttgatggaatctataggttgaacattgc-ttttatttacaatagtttggtta 496  Q
    ||| ||| ||||| ||||||| ||||||||||||| |||| | |||||| ||||||||||| |||||||| ||||||||||||||    
7318616 ttgatgacttgttagatcattattaatcaatggttaatgg-agctatagcttgaacattgctttttattttcaatagtttggtta 7318533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 9594730 - 9594601
Alignment:
11 gttggatgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggact 110  Q
    |||||||||| ||||||||||||||||||||| || | |||||||||||||| || ||||||||||||||||  | || |||||| ||||||||||||||    
9594730 gttggatgtgctgagggattgcttgtgtgtctttgaaactagtgatatgtttttgaatgtttggattatgaataagtacggaaatgaagagtcttggact 9594631  T
111 aaattgtacacggttcctaacatgcaagat 140  Q
    ||||||| |   ||||||||||||||||||    
9594630 aaattgttccatgttcctaacatgcaagat 9594601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 768215 - 768120
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgagagt 323  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||  | |||  || |||| |||||||||||||||    
768215 aagttggttgtttacgattccaaaactgctacttttaatattcttgagtttcaaaacaactatgctcagatgaacccaaaagtctacattgagagt 768120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 7442626 - 7442562
Alignment:
441 aatggttgatggaatctataggttgaacattgcttttatttacaatagtttggttagtttgagtt 505  Q
    |||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||    
7442626 aatggttgatggaatctataggttgaacatagtttttattttcaatagtttggttaatttgagtt 7442562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 7942437 - 7942559
Alignment:
18 gtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||| ||||||  || ||||  |||| | |||||  |||||||||||||||||||  | ||||| |||||||||||||||| ||||||||    
7942437 gtggtgagggattgtttgtgtacctttgcacgtagtaagatgttattggatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgt 7942536  T
118 acacggttcctaacatgcaagat 140  Q
    |||  |||||| ||||| |||||    
7942537 acaatgttccttacatggaagat 7942559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 666894 - 666829
Alignment:
383 gtgttatttattttatgcctgctttgagtcttggtgatttgttggatcattgttaatcaatggttg 448  Q
    |||| ||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||    
666894 gtgtaatttattttatgcttcctttgattcttggtgacttgttggatcattgttaatcaatggttg 666829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 667047 - 666992
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaa 283  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
667047 aagttggttgtttatgattccaagactagtactttgaatattcctgagtttcaaaa 666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 13498211 - 13498278
Alignment:
53 tgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    |||||| ||| |||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||    
13498211 tgatatctttgtggatgtttggattatgaaggaatatggaaataaagagtcttggactaaattataca 13498278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 746413 - 746315
Alignment:
87 tatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagattggggtttagaaccctacaatgctttatacatttctgagtatgac 185  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||| | ||||||||||||||   | |||| || | |||||| ||||||||| |||||    
746413 tatggaaatcaagagtcttggactaaattgtacattgttcctaacctacaagattggggtttcatagcctataaagatttatatatttctgaggatgac 746315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 768435 - 768329
Alignment:
11 gttggatgtggtgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggact 110  Q
    ||||| |||| ||||||||||||||||||| | ||   ||||||| |||||| |  ||||||||||||||||  | || |||||| ||||||||||||||    
768435 gttgggtgtgttgagggattgcttgtgtgtatttgacactagtgaaatgttttttaatgtttggattatgaatgagtacggaaatgaagagtcttggact 768336  T
111 aaattgt 117  Q
    |||||||    
768335 aaattgt 768329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 37753404 - 37753334
Alignment:
58 tgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcct 128  Q
    ||||||||||||||||||||||| |  | |||||||| |||||||||||||||||||||| || |||||||    
37753404 tgtttatggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgtgcaaggttcct 37753334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 2502106 - 2502203
Alignment:
24 agggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacac 121  Q
    ||||||||||||||||||| ||||| |||||||   | |  ||||||||||||||||||  | ||||||||||| |||| |||||||||| |||||||    
2502106 agggattgcttgtgtgtctttgcaggtagtgatgaatattgggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacac 2502203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 43991944 - 43992012
Alignment:
50 tagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgta 118  Q
    |||| |||||||| |||||||||||||||||||  | |||||||||| |||||||||||| ||||||||    
43991944 tagtcatatgtttttggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgta 43992012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 2456235 - 2456302
Alignment:
52 gtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtac 119  Q
    |||||||||||  |||||||||| |||||||  | |||||||||||||| ||||||||||||||||||    
2456235 gtgatatgttttgggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtac 2456302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 14888679 - 14888609
Alignment:
50 tagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||||||| |||| ||||||||||||||  | |||| |||||||||| ||| ||||||||||||||    
14888679 tagtgatatgtttgtggaggtttggattatgaatgaatatgaaaataaagagccttagactaaattgtaca 14888609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 7430594 - 7430533
Alignment:
59 gtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    |||| |||||||||||||||||||  | |||||||||||| |||||| ||||||||||||||    
7430594 gtttttggatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgtaca 7430533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 9587251 - 9587182
Alignment:
51 agtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||| || |||| ||||||||||||||  | ||||||||||||||| ||||||| ||||||||||    
9587251 agtgatatgcttgtggaggtttggattatgaaggaatatggaaataaagagccttggacaaaattgtaca 9587182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 2442038 - 2442090
Alignment:
65 ggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||||||||||||||||  | |||||||||||||| ||||||||||||||||    
2442038 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 2442090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 4142185 - 4142117
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatg 134  Q
    ||||||||| |||||||  | ||||||||||||||||||||||||||||||| |||  ||||| |||||    
4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 4142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 771564 - 771497
Alignment:
52 gtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtac 119  Q
    |||||||||||  |||||||||| |||||||  | |||||||||| ||| ||||||||||||||||||    
771564 gtgatatgttttgggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgtac 771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 803269 - 803218
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||| ||||    
803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgt 803218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 2678450 - 2678399
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||||||| |||||||||| |||||||| |||||||| |||||||||||||    
2678450 gatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgt 2678399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 2696783 - 2696732
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||||||  | |||||||||||||||||||||| ||||||||    
2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 2696732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 3754600 - 3754651
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||||||| |||||||  | |||||||||||||||||||||||||||||||    
3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 3754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 4157995 - 4157944
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||||||| |||||||  | |||||||||||||||||||||||||||||||    
4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 43992127 - 43992182
Alignment:
230 gttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    ||||| ||||||||||||||||| ||||||| |||| ||||||||| |||||||||    
43992127 gttggctgtttacgattccaaaaatggtactctgaagattcctgagattcaaaaca 43992182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 989396 - 989470
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagat 140  Q
    ||||||||| | |||||| | || |||||||||||||||||||||||||||| |||  || || |||||||||||    
989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttacatgcaagat 989470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 1437980 - 1438048
Alignment:
50 tagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtac 119  Q
    ||||| ||||||| ||||||||||| |||||||  | |||||||||||||| ||||||| ||||||||||    
1437980 tagtggtatgtttctggatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattgtac 1438048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 2459277 - 2459326
Alignment:
68 tgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||||  | ||||||||||||||||||||||| |||||||    
2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgt 2459326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 7942650 - 7942707
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    |||||||||||||||||||||||||  | ||||||||| |||| |||| |||||||||    
7942650 aagttggttgtttacgattccaaaaacgatactttgaagattcatgagattcaaaaca 7942707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 783862 - 783782
Alignment:
54 gatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatg 134  Q
    |||||| || |||||||||||||||||||  | |||||||||| | || | |||||||||||||| || |||||| |||||    
783862 gatatgcttgtggatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatg 783782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 1891115 - 1891063
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgta 118  Q
    |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgta 1891063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 9608409 - 9608341
Alignment:
52 gtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||||| | ||||||||| |||||||  | |||||||||| ||| |||||||||||||| ||||    
9608409 gtgatatgttttttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaattataca 9608341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 747238 - 747179
Alignment:
23 gagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaa 82  Q
    ||||||||||||||||||||||  | |||||||||  |||||| || |||||||||||||    
747238 gagggattgcttgtgtgtctctcgaactagtgatacatttatgaatatttggattatgaa 747179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 37757803 - 37757705
Alignment:
50 tagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagattggggttt 148  Q
    |||||| |||| | ||||| | |||||||||||  | |||||||| |||||||||||||| || |||||||  |||||| || || || ||||||||||    
37757803 tagtgaaatgtgtttggatatatggattatgaaggaatatggaaacaaagagtcttggacgaagttgtacagtgttccttacgtggaaaattggggttt 37757705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 771382 - 771325
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    ||||| ||||||||| ||||||||| ||||||||||||  ||||| || |||||||||    
771382 aagttagttgtttacaattccaaaagtggtactttgaagtttcctaagattcaaaaca 771325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 2456414 - 2456471
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    ||||| ||||||||| ||||||||| ||||||||||||  ||||| || |||||||||    
2456414 aagttagttgtttacaattccaaaagtggtactttgaagtttcctaagattcaaaaca 2456471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 9587071 - 9587018
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaa 281  Q
    |||||| |||| || |||||||||| ||||||||| ||||| ||||||||||||    
9587071 aagttgtttgtctatgattccaaaaatggtacttttaatatacctgagtttcaa 9587018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 500
Target Start/End: Original strand, 13498563 - 13498648
Alignment:
416 gtgatttgttggatcattgttaatcaatgg-ttgatggaatctataggttgaacattgcttttatttacaatagtttggttagttt 500  Q
    |||| |||||| |||||||||||| ||||| || |||||||||| |||||||| |||| |  |||||  ||| |||||||||||||    
13498563 gtgacttgttgaatcattgttaattaatgggttaatggaatctacaggttgaaaattgttgatattttaaattgtttggttagttt 13498648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 1438366 - 1438410
Alignment:
421 ttgttggatcattgttaatcaatggttgatggaatctataggttg 465  Q
    |||||| || ||||||||| ||||||||||||||||| |||||||    
1438366 ttgttgaattattgttaattaatggttgatggaatctttaggttg 1438410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 9586987 - 9586959
Alignment:
309 gtctacattgagagtttgatatcacctta 337  Q
    |||||||||||||||||||||||||||||    
9586987 gtctacattgagagtttgatatcacctta 9586959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 9608138 - 9608074
Alignment:
308 tgtctacattgagagtttgatatcaccttaagc-tgggattcaactccaacatatatatggttag 371  Q
    ||||||||  ||||||||||||||||||||||| || ||||||| | | |||||||||| |||||    
9608138 tgtctacaacgagagtttgatatcaccttaagcatgagattcaagtgctacatatatattgttag 9608074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 12218192 - 12218248
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaac 284  Q
    |||||||||||||| | |||||||| |||||||||||| |||||  |||||| ||||    
12218192 aagttggttgtttatggttccaaaattggtactttgaagattcccaagtttctaaac 12218248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 33020269 - 33020535
Alignment:
22 tgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacac 121  Q
    ||||||||||||||||  ||| ||||  ||||||||||||| |  |||| |||||||||||  | |||||||||||| |||||||||||| |||||||      
33020269 tgagggattgcttgtgcttctttgcaaatagtgatatgttttttaatgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccg 33020368  T
122 ggttcctaacatgcaagattggggtttagaacccta---caatgctttatacatttctgagtatgaccaactgttggttgagtttattgagattgaaagt 218  Q
     |||||| ||||| ||||| |||||||    | |||    || |||||||| ||||||||| |||| ||| || || | || ||||  ||| | ||||||    
33020369 tgttccttacatggaagatcggggtttgtgtcactatacaaaggctttatatatttctgaggatgaacaattgctgatggactttaaggagttggaaagt 33020468  T
219 ggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    || ||    ||||||||||||||||||||||||  |||||||||||| ||||||||| |||||||||    
33020469 ggtaaattgaagttggttgtttacgattccaaagatggtactttgaagattcctgagattcaaaaca 33020535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 33038116 - 33038242
Alignment:
22 tgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacac 121  Q
    ||||||||||||||||  ||| ||||  ||||||||||||| | |||||||||||||||||  | |||||||| ||| |||||||||||| |||||||      
33038116 tgagggattgcttgtgcatctttgcaagtagtgatatgttttttgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgtaccg 33038215  T
122 ggttcctaacatgcaagattggggttt 148  Q
     |||||| ||||| ||||| |||||||    
33038216 tgttccttacatggaagatcggggttt 33038242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 33026644 - 33026710
Alignment:
53 tgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtac 119  Q
    |||||||||| ||||||||||| ||||||| || |||||||||||| |||||||||||| |||||||    
33026644 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 33026710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 34560978 - 34560900
Alignment:
56 tatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatg 134  Q
    ||||| |||||||||||  ||||||||| | |||||||||||| | ||||||||||||||||| |  ||||||||||||    
34560978 tatgtctatggatgtttcaattatgaaagaatatggaaataaaaaatcttggactaaattgtatagtgttcctaacatg 34560900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 36577366 - 36577417
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||||||  | |||||||||||||||||||||| ||||||||    
36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 36577417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 33026825 - 33026882
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    ||||||||||||||||||||||||  |||||||||| | ||||||  | |||||||||    
33026825 aagttggttgtttacgattccaaagatggtactttggagattcctacgattcaaaaca 33026882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 33038357 - 33038414
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    |||||| ||||||||||||||||   |||||||||| | ||||||||| |||||||||    
33038357 aagttgtttgtttacgattccaatgatggtactttggagattcctgagattcaaaaca 33038414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 41456255 - 41456367
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgagagtttga 327  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||| ||||  | || | || | ||| |||||||||||||||| |    
41456255 aagttggttgtttatgatttcaagattggtactttgaatattcctgagtttcaaaacaactatgaacggacagaccctaatatctacattgagagtttaa 41456354  T
328 tatcaccttaagc 340  Q
    |||||||||||||    
41456355 tatcaccttaagc 41456367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 20016232 - 20016162
Alignment:
70 tttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagat 140  Q
    ||||||| |||||  | ||||||| | ||||||||||||||||||||| |||  || ||||||||||||||    
20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagat 20016162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 20019823 - 20019749
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagat 140  Q
    ||||||||| | |||||  | ||||||| | ||||||||||||||||||||| |||  || ||||||||||||||    
20019823 gatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagat 20019749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 23766913 - 23766862
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 23816761 - 23816710
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23816710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 20292951 - 20293049
Alignment:
22 tgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||||||||||  ||| || | |||||||| ||  | |||||||||||||||||||  | ||||||| ||||||||||||||||||||| ||||    
20292951 tgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtttggattatgaaggaatatggaattaaagagtcttggactaaattataca 20293049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 20301399 - 20301497
Alignment:
22 tgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||||||||||  ||| || | |||||||| ||  | |||||||||||||||||||  | |||| || ||||||||||||||||||||| ||||    
20301399 tgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtttggattatgaaggaatatgcaattaaagagtcttggactaaattataca 20301497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 20305812 - 20305910
Alignment:
22 tgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||||||||||  ||| || | |||||||| ||  | ||||||| |||||||||||  | ||||||| ||||||||||||||||||||| ||||    
20305812 tgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtctggattatgaaggaatatggaattaaagagtcttggactaaattataca 20305910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 20310216 - 20310314
Alignment:
22 tgagggattgcttgtgtgtctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||||||||||  ||| || | |||||||| ||  | ||||||| |||||||||||  | ||||||| ||||||||||||||||||||| ||||    
20310216 tgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtctggattatgaaggaatatggaattaaagagtcttggactaaattataca 20310314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 11081813 - 11081864
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||||||| |||||||  | |||||||||||||||||||||||||||||||    
11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgt 11081864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 20301675 - 20301743
Alignment:
304 caaatgtctacattgagagtttgatatcaccttaagc-tgggattcaactccaacatatatatggttag 371  Q
    |||| ||||||||||||||||| |||||||||||||| || || ||| || ||||||| ||||||||||    
20301675 caaaagtctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttag 20301743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 20306088 - 20306156
Alignment:
304 caaatgtctacattgagagtttgatatcaccttaagc-tgggattcaactccaacatatatatggttag 371  Q
    |||| ||||||||||||||||| |||||||||||||| || || ||| || ||||||| ||||||||||    
20306088 caaaagtctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttag 20306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 20310492 - 20310560
Alignment:
304 caaatgtctacattgagagtttgatatcaccttaagc-tgggattcaactccaacatatatatggttag 371  Q
    |||| ||||||||||||||||| |||||||||||||| || || ||| || ||||||| ||||||||||    
20310492 caaaagtctacattgagagtttaatatcaccttaagcatgagactcagctgcaacatagatatggttag 20310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 23769697 - 23769646
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||||||  | ||||| ||||||| |||||||||||||||||    
23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23769646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 23819545 - 23819494
Alignment:
66 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||||||  | ||||| ||||||| |||||||||||||||||    
23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23819494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 20293228 - 20293264
Alignment:
304 caaatgtctacattgagagtttgatatcaccttaagc 340  Q
    |||| ||||||||||||||||| ||||||||||||||    
20293228 caaaagtctacattgagagtttaatatcaccttaagc 20293264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 89127 - 89217
Alignment:
50 tagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagat 140  Q
    ||||||||| ||| | ||| ||||| |||||||  | ||||||||||||||||||||||||||||||||||  |||||| ||||| |||||    
89127 tagtgatatattttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagat 89217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 336
Target Start/End: Original strand, 89311 - 89416
Alignment:
231 ttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaacaaatatgtcctgatatactcaaatgtctacattgagagtttgatat 330  Q
    ||||||||||| ||||| |||| |||||||||||| ||||||| | |||||||||   ||   | |||  || |||| ||||||||||||||||||||||    
89311 ttggttgtttatgattcaaaaaatggtactttgaagattcctgtgattcaaaacatcaatcgtcggatggacccaaaagtctacattgagagtttgatat 89410  T
331 cacctt 336  Q
    ||||||    
89411 cacctt 89416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 24417536 - 24417483
Alignment:
67 atgtttggattatgaaacactatggaaataaagagtcttggactaaattgtaca 120  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgtaca 24417483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 370842 - 370785
Alignment:
60 tttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||  |||||| |||||||  | |||||||||||||| ||||||||||||||||    
370842 tttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattgt 370785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 1459594 - 1459541
Alignment:
64 tggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||| ||||| |||||||| | | |||||||||||| ||||||||||||||||    
1459594 tggatatttgggttatgaaagattttggaaataaagaatcttggactaaattgt 1459541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 1470976 - 1470923
Alignment:
64 tggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    ||||| ||||| |||||||| | |||||||||||||| |||||| |||||||||    
1470976 tggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgt 1470923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 34138 - 34221
Alignment:
201 tttattgagattgaaagtggcaatgataagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaac 284  Q
    ||||||||| |||||  |||| |||  || ||||||||||| ||| |||||||||| |||| |||||||||| |||||||||||    
34138 tttattgaggttgaagttggcgatgtgaatttggttgtttatgataccaaaactggcacttcgaatattcctcagtttcaaaac 34221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 439
Target Start/End: Original strand, 34231 - 34336
Alignment:
331 caccttaagctgggattcaactccaacatatatatggttagnnnnnnnngtggtgttatttattttatgcctgctttgagtcttggtgatttgttggatc 430  Q
    ||||||||||  |||||||||| ||||||||||||||||||         | ||||||||||| ||||||||||| ||| | ||||||| ||||| ||||    
34231 caccttaagcatggattcaactgcaacatatatatggttagtttttgt--ttgtgttatttatgttatgcctgctctga-ttttggtgacttgtttgatc 34327  T
431 attgttaat 439  Q
    |||||||||    
34328 attgttaat 34336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 51381502 - 51381455
Alignment:
70 tttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||    
51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgt 51381455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 39299142 - 39299198
Alignment:
228 aagttggttgtttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 285  Q
    ||||| ||||||||| ||||||||| ||||||||| |||||||||||| ||| |||||    
39299142 aagttagttgtttac-attccaaaaatggtacttttaatattcctgagattctaaaca 39299198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 1078212 - 1078160
Alignment:
65 ggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgt 117  Q
    |||||||||| |||||||  | |||||||||| |||||| |||||||||||||    
1078212 ggatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 1078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 39298967 - 39299051
Alignment:
56 tatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacacggttcctaacatgcaagat 140  Q
    ||||||| | ||||||||| || ||||  | | ||||||||||||||| ||||||||||| ||||  |||||| ||||| |||||    
39298967 tatgttttttgatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagat 39299051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 32386 - 32330
Alignment:
60 tttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattg 116  Q
    ||||| ||||||||| |||||||  | |||||||||||||| ||||||| |||||||    
32386 tttattgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University