View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_5 (Length: 512)
Name: NF3041_low_5
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 131 - 495
Target Start/End: Complemental strand, 36052598 - 36052234
Alignment:
| Q |
131 |
ttaaatacatagccaagtagagaaaggagtctaccttccacgctagaattttccaaaaataattggtttgccttatcattactacacattagaatagcaa |
230 |
Q |
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| T |
36052598 |
ttaaatacatagccaagtagagaaaggagtctaccttccacgctagaattttccaaaaataattggtttgccttatcattactacacattagaatagcaa |
36052499 |
T |
|
| Q |
231 |
ttgaagagatacatgaagatatcattgcaatagtggcccttaacatgtcaggctgatcatggcaaagttgtgatggtagttcaatagctttatggtgcga |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36052498 |
ttgaagagatacatgaagatatcattgcaatagtggcccttaacatgtcaggctgatcatggcatagttgtgatggtagttcaatagctttatggtgcga |
36052399 |
T |
|
| Q |
331 |
cacatatgttgaacaaacaatcagcagaacaatgacattaatataatcagtaattgtgatcaaacctgtctgagaaagtttatacactgcactagcttca |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052398 |
cacatatgttgaacaaacaatcagcagaacaatgacattaatataatcagtaattgtgatcaaacctgtctgagaaagtttatacactgcactagcttca |
36052299 |
T |
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| Q |
431 |
cccaacttaaacataatgataagtgcctctagaagnnnnnnnatcccaaacagtgtggtgatagt |
495 |
Q |
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| T |
36052298 |
cccaacttaaacataatgataagtgcctctagaagtttttttatcccaaacagtgtggtgatagt |
36052234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 36052742 - 36052628
Alignment:
| Q |
14 |
atcaaaaggaggttcaaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacatttacaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052742 |
atcaaaaggaggttcaaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacatttacaa |
36052643 |
T |
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| Q |
114 |
atgttgagaacctat |
128 |
Q |
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||||||||||||||| |
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| T |
36052642 |
atgttgagaacctat |
36052628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 6072465 - 6072371
Alignment:
| Q |
16 |
caaaaggaggttcaaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacattta |
110 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
6072465 |
caaaagtaggttcaaatcatgcaaaacatcattgcaatagaagtgaacaaacccacaaattccaaagaactcatcagcatgcttatggacattta |
6072371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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