View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3041_low_6 (Length: 459)

Name: NF3041_low_6
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3041_low_6
NF3041_low_6
[»] chr5 (6 HSPs)
chr5 (30-453)||(15265051-15265474)
chr5 (162-451)||(15256658-15256947)
chr5 (183-451)||(15287350-15287618)
chr5 (165-373)||(15262886-15263094)
chr5 (192-336)||(15284412-15284556)
chr5 (3-35)||(11062339-11062371)
[»] chr3 (1 HSPs)
chr3 (186-336)||(51383597-51383747)
[»] chr8 (1 HSPs)
chr8 (186-336)||(44247998-44248148)
[»] chr7 (2 HSPs)
chr7 (186-336)||(11806916-11807066)
chr7 (199-244)||(6364206-6364251)
[»] chr6 (2 HSPs)
chr6 (189-244)||(6543654-6543709)
chr6 (199-244)||(6554179-6554224)
[»] scaffold0929 (1 HSPs)
scaffold0929 (199-244)||(2265-2310)


Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 30 - 453
Target Start/End: Original strand, 15265051 - 15265474
Alignment:
Q  30 tttttatgtctaagctgaatcttaaattatttgttccaaggtaatataagtcacatgtcatgtaaacaaaaatgtataaattaacaacatatgagaaaca 129  Q
    |||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15265051 ttttgatgtctaatctgaatcttgaattctttgttccaaggtaatataagtcacatgtcatgtaaaaaaaaatgtataaattaacaacatatgagaaaca 15265150  T
Q  130 cttcactcttaattcactcctagctaggttgttcctcccatttctttattatttctaaaaatatctcattccatgtatcaatcggtccaggcaaacacca 229  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15265151 cttcattcttaattcactcctagctaggttgttcctcccatttctttataatttctaaaaatatctcattccatgtatcaattggtccaggcaaacacca 15265250  T
Q  230 atgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaat 329  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15265251 atgaacacaatcattttgcacatgttcttgaaccccattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaat 15265350  T
Q  330 tttgttacatccaatacttcaaatcttaaccttccaaattcattgcctttggctttagcagccaccacttcttctatctcaatctttctcatttcaccat 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15265351 tttgttacatccaatacttcaaatcttaaccttccaaattcattgcctttggctttagcagccaccacttcttctatctcaatctttctcatctcaccat 15265450  T
Q  430 ccattccttcaactttcttctctc 453  Q
    ||||||||||||||||||||||||    
T  15265451 ccattccttcaactttcttctctc 15265474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 162 - 451
Target Start/End: Original strand, 15256658 - 15256947
Alignment:
Q  162 tcctcccatttctttattatttctaaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaa 261  Q
    |||||||||||||| || || || | ||| |||||||||||||| || || |||||||||||||||||||||||||||||||| |||||| ||||| |||    
T  15256658 tcctcccatttcttcataatctccagaaaaatctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcacacgttctggaa 15256757  T
Q  262 ctccattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatccaatacttcaaatcttaacct 361  Q
    | |||||    ||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | | | ||||| || | ||     
T  15256758 caccattggcaaatggaaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaagtgcctcaaacctaacccc 15256857  T
Q  362 tccaaattcattgcctttggctttagcagccaccacttcttctatctcaatctttctcatttcaccatccattccttcaactttcttctc 451  Q
    |||||||||| | |||||  | |||||| |  | |||||||| | |||||| || ||||| |||| |||||||||||||| || ||||||    
T  15256858 tccaaattcactacctttcaccttagcatcttcaacttcttcaacctcaattttcctcatctcactatccattccttcaagttccttctc 15256947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 183 - 451
Target Start/End: Original strand, 15287350 - 15287618
Alignment:
Q  183 tctaaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaag 282  Q
    |||| ||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| |||| || | ||||||||||    ||||||||||    
T  15287350 tctacaaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaag 15287449  T
Q  283 gattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatccaatacttcaaatctta-accttccaaattcattgcctttgg 381  Q
    ||||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| || |||| ||| | ||||| |||||| |||  |||| |    
T  15287450 gattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagttacatccaacacctcaattctaatacctt-caaatttattagcttttg 15287548  T
Q  382 ctttagcagccaccacttcttctatctcaatctttctcatttcaccatccattccttcaactttcttctc 451  Q
      || |||    |||||||||||||||||||| |||| || ||||||||||||||| ||||| |||||||    
T  15287549 tcttggcactttccacttcttctatctcaatccttctaatctcaccatccattcctccaactatcttctc 15287618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 165 - 373
Target Start/End: Complemental strand, 15263094 - 15262886
Alignment:
Q  165 tcccatttctttattatttctaaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactc 264  Q
    ||||| ||||| || || |||| ||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||  | | |||| |    
T  15263094 tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcattttgcacatactttggaacac 15262995  T
Q  265 cattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatccaatacttcaaatcttaaccttcc 364  Q
    | ||   ||| |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||  |||||||||||||| |||||||| | || |||    
T  15262994 cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattcagttacatccaatacctcaaatctaatccctcc 15262895  T
Q  365 aaattcatt 373  Q
    |||| ||||    
T  15262894 aaatgcatt 15262886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 192 - 336
Target Start/End: Complemental strand, 15284556 - 15284412
Alignment:
Q  192 atctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggattcatat 291  Q
    ||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| |||| || | ||||||||||    |||||||||||||||||||    
T  15284556 atctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaaggattcatat 15284457  T
Q  292 aaggacctggatgaccatctggtcttaacaaagccaattttgtta 336  Q
    ||| ||| | ||||||||||||||| ||||| |||||||||||||    
T  15284456 aagcaccagcatgaccatctggtctcaacaatgccaattttgtta 15284412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 11062371 - 11062339
Alignment:
Q  3 aaggactaaagacatatttaaacctctttttta 35  Q
    ||||||||||||||||||||||||| |||||||    
T  11062371 aaggactaaagacatatttaaacctttttttta 11062339  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 336
Target Start/End: Complemental strand, 51383747 - 51383597
Alignment:
Q  186 aaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggat 285  Q
    ||||| ||||||||||| || || || ||||| ||||||||||||||||||||||||||||| ||||  | | ||| |||||||   |||||||||||||    
T  51383747 aaaaaaatctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaattccattagcaaatggaaaaggat 51383648  T
Q  286 tcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta 336  Q
    |||| || |  |||| ||||||||||||||| ||||| |||||||||||||    
T  51383647 tcatgtaggctcctgcatgaccatctggtctcaacaatgccaattttgtta 51383597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 44247998 - 44248148
Alignment:
Q  186 aaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggat 285  Q
    ||||| |||||||||||  |||| || ||||| ||||| ||||||||||||||||||||||| ||||  | | |||| |  |||   |||||||||||||    
T  44247998 aaaaaaatctcattccaaatatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggat 44248097  T
Q  286 tcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta 336  Q
    |||||||||  |||| ||||||||||||||| || || ||||| |||||||    
T  44248098 tcatataagctcctgcatgaccatctggtctcaataatgccaactttgtta 44248148  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 11806916 - 11807066
Alignment:
Q  186 aaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggat 285  Q
    ||||| ||||||||||| |||||||| ||||| ||||| |||||||||  |||||| ||||| ||||  | | ||| |   |||   |||||||||||||    
T  11806916 aaaaaaatctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaattgttttagcaaatggaaaaggat 11807015  T
Q  286 tcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta 336  Q
     | ||||||  |||| ||||||||||||||| ||||| |||||||||||||    
T  11807016 acctataagctcctgcatgaccatctggtctcaacaatgccaattttgtta 11807066  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 6364206 - 6364251
Alignment:
Q  199 tccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt 244  Q
    ||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  6364206 tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt 6364251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 6543654 - 6543709
Alignment:
Q  189 aatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt 244  Q
    |||| |||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  6543654 aataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt 6543709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
Q  199 tccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt 244  Q
    |||||||||| || || || ||||||||||||||||||||||||||    
T  6554179 tccatgtatctataggccctggcaaacaccaatgaacacaatcatt 6554224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0929 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0929
Description:

Target: scaffold0929; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  199 tccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt 244  Q
    ||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  2265 tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt 2310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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