View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3041_low_7 (Length: 414)
Name: NF3041_low_7
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 183 - 399
Target Start/End: Original strand, 12800877 - 12801093
Alignment:
| Q |
183 |
gtttaaaactagggcattgtttttgaggtcataaactagaacatgtaaaatgttgataaacannnnnnnnngcttcctatttaatttatatcatcaccca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12800877 |
gtttaaaactagggcattgtttttgaggtcataaactagaacatgtaaaatgttgataaacttttttttttgcttcctatttaatttatatcatcaccca |
12800976 |
T |
|
| Q |
283 |
acagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgttgttcattgcactcatggagtgtagttgct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12800977 |
acagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgttgttcattgcactcatggagtgtagttgct |
12801076 |
T |
|
| Q |
383 |
gctctctttgtgaaaat |
399 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
12801077 |
gttctctttgtgaaaat |
12801093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 12800708 - 12800850
Alignment:
| Q |
13 |
aatattctcgattaatttccttgtcaagaggtaaatataattatttttgtaagtttcattgagctcgaaggtttttcctgtcttgatggcacat-catcg |
111 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |
|
|
| T |
12800708 |
aatattctcgactaatttccttatcaagaggtaaatataattatttttgtaagtttcattgagctcgaaggtttttcatgtcttgatggcacatacattg |
12800807 |
T |
|
| Q |
112 |
cacattttagaattcataaactaaaataccaattgtcaattac |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12800808 |
cacattttagaattcataaactaaaataccaattgtcaattac |
12800850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University