View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3041_low_9 (Length: 389)
Name: NF3041_low_9
Description: NF3041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3041_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 19571287 - 19571650
Alignment:
| Q |
11 |
cataggacctgtatcaccataatttgattattgtcaagttatttttcaagagataacttcaaatcagattccaagtttgcagagatgcacgtttttctgg |
110 |
Q |
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| T |
19571287 |
cataggacctgtatcaccataatttgattattgtcaagttttttttcaagagataacttcaaatcagattccaagtttgcagagatgcacgtttttctgg |
19571386 |
T |
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| Q |
111 |
ttaaaaccatacaatagtgataagtaagaatctgaagtgttgcatgagagaacatatgatcctcaagtgtccaatgaatttgtttaatttcatgctatgt |
210 |
Q |
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| T |
19571387 |
ttaaaaccatacaatagtgataagtaagaatctgaagtgttgcatgagagaacatatgatcctcaagtgtccaatgaatttgtttaatttcatgctatgt |
19571486 |
T |
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| Q |
211 |
agggaaaaaatgaaacttgagtcaaatcatagttatctgtactccaacttatatactagggcatattttagtctataaagcctatatgtaagaacnnnnn |
310 |
Q |
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| T |
19571487 |
agggaaaaaatgaaacttgagtcaaatcatagttatctgtactccaacttatatactagggcatattttagtctataaagcctatatgtaagaacaaaaa |
19571586 |
T |
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| Q |
311 |
nntatgtaagttagaccgtatcatgtaagaaaagtggattgtacgtcatgagttaagtatttag |
374 |
Q |
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| T |
19571587 |
aatatgtgagttagaccgtatcatgtaagaaaagtggattgtacgtcatgagttaagtatttag |
19571650 |
T |
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