View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3042_high_19 (Length: 250)
Name: NF3042_high_19
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_high_19 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 23379465 - 23379708
Alignment:
| Q |
7 |
tcgaagaatatacctaaaataaaataaaatttagggttcatgctaaaaataaagagaaccaaatatggagacacacccaagcataaatcaatgactcaag |
106 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23379465 |
tcgaacaaaatacctaaaataaaataaaatttagggttcatgctaaaaataaagagaaccaaatatggagacacacccaagcataaatcaatgactcaag |
23379564 |
T |
|
| Q |
107 |
agcactcataatattctccnnnnnnnnaaatattaaaattatacttcctctgtctcaaattgtcagaaaaaattgttgctttggtggcttcatctgttaa |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23379565 |
agcactcataatattctccttttttttaaatattaaaattatacttcctccttctcaaattgtcagaaaaaattgttgctttggtggcttcatctgttaa |
23379664 |
T |
|
| Q |
207 |
tccttttgtttggatctggtttggttttaaaagagccacttctt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23379665 |
tccttttgtttggatctggtttggttttaaaagagccacttctt |
23379708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University