View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3042_high_25 (Length: 212)

Name: NF3042_high_25
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3042_high_25
NF3042_high_25
[»] chr4 (23 HSPs)
chr4 (5-212)||(43627257-43627464)
chr4 (140-208)||(32293110-32293178)
chr4 (140-212)||(39023177-39023249)
chr4 (134-209)||(45139880-45139955)
chr4 (165-211)||(24704156-24704202)
chr4 (140-202)||(41621273-41621335)
chr4 (140-209)||(33933738-33933807)
chr4 (140-209)||(51890799-51890868)
chr4 (140-212)||(4958552-4958624)
chr4 (140-212)||(7686258-7686330)
chr4 (141-196)||(29406360-29406415)
chr4 (164-202)||(2629605-2629643)
chr4 (178-212)||(3157213-3157247)
chr4 (164-210)||(23924870-23924916)
chr4 (164-209)||(11294837-11294882)
chr4 (140-209)||(11375888-11375957)
chr4 (142-187)||(38541887-38541932)
chr4 (171-212)||(40486474-40486515)
chr4 (140-209)||(42044045-42044114)
chr4 (134-191)||(47678610-47678667)
chr4 (138-206)||(21432614-21432682)
chr4 (140-196)||(39697874-39697930)
chr4 (140-212)||(45849049-45849121)
[»] chr6 (17 HSPs)
chr6 (140-209)||(23610318-23610387)
chr6 (140-212)||(24319015-24319087)
chr6 (140-209)||(9689302-9689371)
chr6 (140-212)||(9372197-9372269)
chr6 (141-199)||(7771290-7771348)
chr6 (140-202)||(20568291-20568353)
chr6 (140-212)||(19892272-19892344)
chr6 (152-196)||(32388240-32388284)
chr6 (140-212)||(32813646-32813718)
chr6 (142-212)||(15963939-15964009)
chr6 (140-202)||(34268284-34268346)
chr6 (140-209)||(3294766-3294835)
chr6 (141-202)||(32283541-32283602)
chr6 (152-209)||(32620070-32620127)
chr6 (140-212)||(7865351-7865423)
chr6 (140-212)||(10517201-10517273)
chr6 (140-212)||(33573819-33573891)
[»] chr7 (19 HSPs)
chr7 (140-209)||(45284818-45284887)
chr7 (140-209)||(22774042-22774111)
chr7 (140-209)||(41853999-41854068)
chr7 (140-212)||(19752964-19753036)
chr7 (140-196)||(41331091-41331147)
chr7 (142-209)||(25155545-25155612)
chr7 (165-212)||(47437961-47438008)
chr7 (140-202)||(14650509-14650571)
chr7 (171-209)||(47440809-47440847)
chr7 (140-209)||(23274813-23274882)
chr7 (143-212)||(41913760-41913829)
chr7 (140-212)||(2681098-2681170)
chr7 (140-192)||(7876001-7876053)
chr7 (140-212)||(15238891-15238963)
chr7 (136-212)||(30388503-30388579)
chr7 (140-212)||(35950130-35950202)
chr7 (140-212)||(36391900-36391972)
chr7 (141-201)||(38151347-38151407)
chr7 (140-204)||(47070313-47070377)
[»] chr2 (18 HSPs)
chr2 (140-209)||(23405198-23405267)
chr2 (138-201)||(13242738-13242801)
chr2 (143-209)||(32190001-32190067)
chr2 (163-209)||(3596275-3596321)
chr2 (139-209)||(14663985-14664055)
chr2 (164-209)||(1964379-1964424)
chr2 (140-209)||(20919612-20919681)
chr2 (164-212)||(3154023-3154071)
chr2 (140-212)||(5521216-5521288)
chr2 (140-212)||(27016279-27016351)
chr2 (140-212)||(40535445-40535517)
chr2 (166-204)||(14802999-14803037)
chr2 (140-186)||(35429624-35429670)
chr2 (140-185)||(7661421-7661466)
chr2 (140-212)||(2289612-2289684)
chr2 (140-212)||(20296420-20296492)
chr2 (140-212)||(22653640-22653712)
chr2 (138-202)||(44694685-44694749)
[»] chr8 (20 HSPs)
chr8 (142-209)||(12770372-12770439)
chr8 (132-196)||(20872470-20872534)
chr8 (142-209)||(11231424-11231491)
chr8 (140-209)||(481013-481082)
chr8 (140-212)||(2792781-2792853)
chr8 (140-211)||(43980310-43980381)
chr8 (142-209)||(44156716-44156783)
chr8 (138-212)||(10200677-10200751)
chr8 (135-209)||(25890403-25890477)
chr8 (139-209)||(26192715-26192785)
chr8 (138-183)||(32223898-32223943)
chr8 (140-209)||(35939489-35939558)
chr8 (164-196)||(550327-550359)
chr8 (152-196)||(7948386-7948430)
chr8 (140-212)||(8265270-8265342)
chr8 (138-202)||(19163536-19163600)
chr8 (140-212)||(23178887-23178959)
chr8 (140-212)||(23858199-23858271)
chr8 (140-212)||(39587549-39587621)
chr8 (165-209)||(43846962-43847006)
[»] chr1 (29 HSPs)
chr1 (134-209)||(31401244-31401319)
chr1 (140-209)||(36666575-36666644)
chr1 (133-209)||(24084000-24084076)
chr1 (140-203)||(11065122-11065185)
chr1 (140-202)||(8741475-8741537)
chr1 (163-209)||(10632719-10632765)
chr1 (144-202)||(33843201-33843259)
chr1 (144-202)||(33950720-33950778)
chr1 (141-202)||(13401597-13401658)
chr1 (164-209)||(23991263-23991308)
chr1 (140-212)||(8865856-8865928)
chr1 (151-202)||(11249456-11249507)
chr1 (140-187)||(24874140-24874187)
chr1 (139-189)||(40800281-40800331)
chr1 (141-202)||(1247258-1247319)
chr1 (140-209)||(11333666-11333735)
chr1 (140-209)||(11491687-11491756)
chr1 (140-209)||(11860044-11860113)
chr1 (140-209)||(16997258-16997327)
chr1 (133-202)||(18607815-18607884)
chr1 (171-212)||(24910474-24910515)
chr1 (133-202)||(25532965-25533034)
chr1 (140-209)||(42490409-42490478)
chr1 (140-212)||(18534003-18534075)
chr1 (140-212)||(22563388-22563460)
chr1 (165-201)||(24983463-24983499)
chr1 (138-202)||(27533240-27533304)
chr1 (140-212)||(32594253-32594325)
chr1 (140-184)||(44579884-44579928)
[»] chr5 (17 HSPs)
chr5 (140-209)||(7462831-7462900)
chr5 (140-204)||(35241398-35241462)
chr5 (141-196)||(41083549-41083604)
chr5 (141-202)||(32550179-32550240)
chr5 (140-212)||(36888391-36888463)
chr5 (140-211)||(35112959-35113030)
chr5 (151-201)||(28758425-28758475)
chr5 (178-212)||(38129037-38129071)
chr5 (140-209)||(3198329-3198398)
chr5 (132-201)||(18928714-18928783)
chr5 (140-189)||(20501397-20501446)
chr5 (164-209)||(24456215-24456260)
chr5 (178-210)||(10905134-10905166)
chr5 (140-212)||(11897250-11897322)
chr5 (140-212)||(17545168-17545240)
chr5 (138-202)||(34436848-34436912)
chr5 (140-212)||(36124401-36124473)
[»] chr3 (21 HSPs)
chr3 (140-209)||(4236979-4237047)
chr3 (141-209)||(32776214-32776282)
chr3 (138-209)||(30779566-30779637)
chr3 (140-209)||(4227743-4227812)
chr3 (140-209)||(11995133-11995202)
chr3 (140-209)||(24303392-24303461)
chr3 (162-209)||(41411626-41411673)
chr3 (138-212)||(44764722-44764794)
chr3 (178-212)||(17729031-17729065)
chr3 (178-212)||(19030260-19030294)
chr3 (164-209)||(19222585-19222630)
chr3 (140-209)||(34102610-34102679)
chr3 (176-209)||(42785932-42785965)
chr3 (140-209)||(46844970-46845039)
chr3 (140-209)||(49983707-49983776)
chr3 (164-209)||(54408549-54408594)
chr3 (152-196)||(2106038-2106082)
chr3 (164-196)||(26880203-26880235)
chr3 (134-202)||(47098512-47098580)
chr3 (141-209)||(48515384-48515452)
chr3 (140-212)||(49375677-49375749)
[»] scaffold0519 (1 HSPs)
scaffold0519 (142-209)||(2961-3028)
[»] scaffold0154 (1 HSPs)
scaffold0154 (144-209)||(28820-28885)
[»] scaffold0250 (1 HSPs)
scaffold0250 (140-202)||(15007-15069)
[»] scaffold0246 (1 HSPs)
scaffold0246 (171-212)||(24413-24454)
[»] scaffold0707 (1 HSPs)
scaffold0707 (140-212)||(16-88)
[»] scaffold0178 (1 HSPs)
scaffold0178 (137-212)||(4319-4394)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 43627464 - 43627257
Alignment:
Q  5 tgtcgaagaatatggaccactagttgggacttttttattttgaaagaccactagttgggacttgggagggaagacaatgaccagtcttgattgcagcaca 104  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43627464 tgtccaagaaaatggaccactagttgggacttttttattttgaaagaccactagttgggacttgggagggaagacaatgaccagtcttgattgcagcaca 43627365  T
Q  105 attgaattgaaacaaagtaagggtttaatagttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctg 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  43627364 attgaattgaaacaaagtaagggtttaatagttctcgtgagtttagttcagttgatatagacattgcataatttatgcaggggtcggggttcaaaccctg 43627265  T
Q  205 gacactcc 212  Q
    ||||||||    
T  43627264 gacactcc 43627257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 32293110 - 32293178
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggaca 208  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||  |||||||||||    
T  32293110 cgtgagcttagctcagttgataaggacattgcataatttatgcaggggtcggggttagaaccctggaca 32293178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 39023177 - 39023249
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | ||||||||||||||||||| |||||||||||||||    
T  39023177 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggtcggggttcgaaccctggacactcc 39023249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 45139955 - 45139880
Alignment:
Q  134 agttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||| ||||||||||| ||||||| ||  ||||||  |||||||||||||||| |||||||| ||||| ||||||    
T  45139955 agttcccgtgagcttagctcagttggtagggacattgtataatttatgcaggggccggggttcgaaccccggacac 45139880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 24704156 - 24704202
Alignment:
Q  165 acatttcataatttatgcaggggtcggggttcaaaccctggacactc 211  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  24704156 acattgcataatttatgcaggggtcggagttcgaaccctggacactc 24704202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 41621335 - 41621273
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||| ||| |||| | ||| |||  |||||||||||||||||||||||||||||||    
T  41621335 cgtgagcttagctcaattgacagagatattgtataatttatgcaggggtcggggttcaaaccc 41621273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 33933807 - 33933738
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  |||||| |||||| |||||||||| |||||||| | ||||||||||    
T  33933807 cgtgagcttagctcagttggtagggacattgcataatatatgcaggggccggggttcgacccctggacac 33933738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 51890799 - 51890868
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| |||||||  |  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  51890799 cgtgagcttagctcagttggcagggacattgcataatttatgcaggggccggggttcgaaccccggacac 51890868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 4958624 - 4958552
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  4958624 cgtgagcttagttcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 4958552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 7686330 - 7686258
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| || ||| ||| |||  | |||||||||| |||||||| |||||||||||||||    
T  7686330 cgtgagcttagctcagttggtagagatattgcattttatatgcaggggccggggttcgaaccctggacactcc 7686258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 29406360 - 29406415
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    |||||||||| ||| ||| ||  |||||| ||||||||||||||||||||||||||    
T  29406360 gtgagcttagctcaattggtagggacattgcataatttatgcaggggtcggggttc 29406415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 2629605 - 2629643
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  2629605 gacattgcataatttatgcaggggtcggggttcgaaccc 2629643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 3157247 - 3157213
Alignment:
Q  178 tatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||||||| |||||||||||    
T  3157247 tatgcaggggtcggggttcaaactctggacactcc 3157213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 23924916 - 23924870
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacact 210  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||    
T  23924916 gacattgcataatttatgcaggggccggggttcgaaccccggacact 23924870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 11294882 - 11294837
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  11294882 gacattgcataatttatgcaggggccggggttcgaaccccggacac 11294837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 11375957 - 11375888
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||||||  || ||| |||| | |||||||||| |||||||| ||||| ||||||    
T  11375957 cgtgagcttagctcagttgatagggatattgcatattatatgcaggggccggggttcgaaccccggacac 11375888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 38541932 - 38541887
Alignment:
Q  142 tgagcttagttcagttgatacagacatttcataatttatgcagggg 187  Q
    |||| ||||||||||||||| ||||||| ||||||||||| |||||    
T  38541932 tgagtttagttcagttgataaagacattgcataatttatgtagggg 38541887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 40486474 - 40486515
Alignment:
Q  171 cataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||| |||||||| ||||| |||||||||    
T  40486474 cataatttatgcaggggccggggttcgaaccccggacactcc 40486515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 42044114 - 42044045
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| |||||||  | ||||||| ||||||||||||||||| || ||||  ||||| ||||||    
T  42044114 cgtgagcttagctcagttggcagagacattgcataatttatgcaggggccgaggtttgaaccccggacac 42044045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 47678667 - 47678610
Alignment:
Q  134 agttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcgg 191  Q
    ||||| ||||||||||||||||||| ||  |||||| ||||||||||  |||||||||    
T  47678667 agttcccgtgagcttagttcagttggtagggacattgcataatttatataggggtcgg 47678610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 21432614 - 21432682
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctgga 206  Q
    ||||||||||||||||||||| || ||| ||| |||| | ||| ||| |||||||| || |||||||||    
T  21432614 ctcgtgagcttagttcagttggtagagatattgcatattatatacagaggtcggggatcgaaccctgga 21432682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 39697930 - 39697874
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    ||||||||||| ||||||||||  || ||| |||| | |||||||||||||||||||    
T  39697930 cgtgagcttagctcagttgatagggatattgcatattatatgcaggggtcggggttc 39697874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 45849049 - 45849121
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| ||||||||||||  || |||| |||||||||||||||    
T  45849049 cgtgagcttagctcagttggtagggatattgcatattttatgcaggggctggagttcgaaccctggacactcc 45849121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 23610387 - 23610318
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  |||||| |||||||||||||||||||||||||||||| ||||||||    
T  23610387 cgtgagcttagctcagttggtagggacattgcataatttatgcaggggtcggggttcaaacgctggacac 23610318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 24319015 - 24319087
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    |||||| |||||||||||| ||  |||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  24319015 cgtgagtttagttcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggacactcc 24319087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 9689371 - 9689302
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||||||| |||| |  |||||| ||||||||||| || ||||||||||| ||||||||||||    
T  9689371 cgtgagcttagttcaattgacagtgacattgcataatttatgtagaggtcggggttcgaaccctggacac 9689302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 9372269 - 9372197
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | ||||||||||||||||||| |||||||||||||||    
T  9372269 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggtcggggttcgaaccctggacactcc 9372197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 7771290 - 7771348
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaa 199  Q
    |||||||||| |||||||| |  |||||| ||||||||||||||||||| |||||||||    
T  7771290 gtgagcttagctcagttgacagggacattgcataatttatgcaggggtcagggttcaaa 7771348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 20568353 - 20568291
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||| ||||||| ||  |||||| |||||| ||||||||||||||||||| |||||    
T  20568353 cgtgagcttagctcagttggtaaggacattgcataatatatgcaggggtcggggttcgaaccc 20568291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 19892344 - 19892272
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| ||  || ||| |||| | |||| |||||||||||||| ||||| |||||||||    
T  19892344 cgtgagcttagttcagttggtagggatattgcatattatatgtaggggtcggggttcgaaccccggacactcc 19892272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 32388240 - 32388284
Alignment:
Q  152 tcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    ||||||||||  |||||| ||||||||||||||||||||||||||    
T  32388240 tcagttgatagggacattgcataatttatgcaggggtcggggttc 32388284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 32813718 - 32813646
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| ||| || ||| |||| | |||||||||| |||||||| ||||| ||| |||||    
T  32813718 cgtgagcttagttcagttggtacggatattgcatattatatgcaggggccggggttcgaaccccggatactcc 32813646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 15964009 - 15963939
Alignment:
Q  142 tgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||| ||||||| ||  || ||| |||| ||||||||||||  ||||||| |||||||||||||||    
T  15964009 tgagcttagctcagttggtagggatattgcatattttatgcaggggctggggttcgaaccctggacactcc 15963939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 34268284 - 34268346
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||| || |||| ||  |||||| ||||||||||||||||||| |||||| |||||    
T  34268284 cgtgagcttagctccgttggtagggacattgcataatttatgcaggggtcagggttcgaaccc 34268346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 3294766 - 3294835
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  || ||| |||| | ||||||||||||||||||| ||||| ||||||    
T  3294766 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggtcggggttcgaaccccggacac 3294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 32283541 - 32283602
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    |||||||||| ||| ||| ||  |||||| ||||||||||||| |||||||||||| |||||    
T  32283541 gtgagcttagctcaattggtagggacattgcataatttatgcaagggtcggggttcgaaccc 32283602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 32620127 - 32620070
Alignment:
Q  152 tcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||  |||||| ||||||||||||||| || ||||||| || |||||||||    
T  32620127 tcagttgatatggacattgcataatttatgcaggagttggggttcgaatcctggacac 32620070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 7865423 - 7865351
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| |||||||  |||||||||||||||    
T  7865423 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggtttgaaccctggacactcc 7865351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 10517201 - 10517273
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||  | ||||||||||||||||||| ||||| |||||||||    
T  10517201 cgtgagcttagctcagttggtatggatattgcattttatatgcaggggtcggggttcgaaccccggacactcc 10517273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 33573819 - 33573891
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| | |||||||| |||||||||||||||    
T  33573819 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagccggggttcgaaccctggacactcc 33573891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 45284887 - 45284818
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||||||  ||||||  ||||||||||||||||||||||||| ||||| ||||||    
T  45284887 cgtgagcttagctcagttgatagggacattgaataatttatgcaggggtcggggttcgaaccccggacac 45284818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 22774042 - 22774111
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||| |||| |  |||||| |||||||||||||||||  ||||||||||||| ||||||    
T  22774042 cgtgagcttagctcaattgacagggacattgcataatttatgcaggggcaggggttcaaaccccggacac 22774111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 41853999 - 41854068
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| |||||||  |  |||||| ||||||||||||||||| ||| |||||||||| ||||||    
T  41853999 cgtgagcttagctcagttggcagggacattgcataatttatgcaggggacggagttcaaaccccggacac 41854068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 19753036 - 19752964
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| |||||||| |||||||||||||||    
T  19753036 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaaccctggacactcc 19752964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 41331147 - 41331091
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    ||||||||||| |||||||  |  |||||| ||||||||||||||||||||||||||    
T  41331147 cgtgagcttagctcagttggcagggacattgcataatttatgcaggggtcggggttc 41331091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 25155545 - 25155612
Alignment:
Q  142 tgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||||||||||||||  | ||| | | |||| ||||||||||| ||||||||| ||||||||||||    
T  25155545 tgagcttagttcagttggcaaagataatgcatattttatgcagggttcggggttcgaaccctggacac 25155612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 47437961 - 47438008
Alignment:
Q  165 acatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||| |||||||||||||||||  ||||||||||||| |||||||||    
T  47437961 acattgcataatttatgcaggggcaggggttcaaaccccggacactcc 47438008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 14650509 - 14650571
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||| ||| ||| || ||||||| |||||||||||||||| |||| |||| |||||    
T  14650509 cgtgagcttagctcaattggtaaagacattgcataatttatgcagggatcggagttcgaaccc 14650571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 47440847 - 47440809
Alignment:
Q  171 cataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  47440847 cataatatatgcaggggtcggggttcgaaccctggacac 47440809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 23274882 - 23274813
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| | ||||| ||  |||||| ||||||||||||||||| ||| |||| ||||| ||||||    
T  23274882 cgtgagcttagctaagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacac 23274813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 41913829 - 41913760
Alignment:
Q  143 gagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    |||||||| |||||||||| ||| ||| |||  | |||||||||||| |||||| ||||| |||||||||    
T  41913829 gagcttagctcagttgatagagatattgcattttatatgcaggggtcagggttcgaaccccggacactcc 41913760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 2681098 - 2681170
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  2681098 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 2681170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 7876001 - 7876053
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggg 192  Q
    ||||||||||| ||||||| ||  |||||| |||||||||||||||| |||||    
T  7876001 cgtgagcttagctcagttggtagggacattgcataatttatgcagggatcggg 7876053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 15238891 - 15238963
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| |||||||| ||||| |||||||||    
T  15238891 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacactcc 15238963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 30388579 - 30388503
Alignment:
Q  136 ttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||| ||||||| ||  || ||| |||| | |||||||||| |||||||| |||||  ||||||||    
T  30388579 ttctcgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccagacactcc 30388503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 35950130 - 35950202
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  35950130 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 35950202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 36391972 - 36391900
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  36391972 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 36391900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 38151347 - 38151407
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaacc 201  Q
    |||||||||| ||||||| ||  || ||| ||| |||||||||||||||||||||| ||||    
T  38151347 gtgagcttagctcagttggtagggatattgcattatttatgcaggggtcggggttcgaacc 38151407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 47070377 - 47070313
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctg 204  Q
    ||||||||||| ||||||| ||  |||||| |||||||||| |||||  |||||||| |||||||    
T  47070377 cgtgagcttagctcagttggtatggacattgcataatttatacagggaccggggttcgaaccctg 47070313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 23405198 - 23405267
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  |||||| |||||| ||||||||||||||||||| ||||||||||||    
T  23405198 cgtgagcttagctcagttggtagggacattgcataatatatgcaggggtcggggttcgaaccctggacac 23405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 13242801 - 13242738
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaacc 201  Q
    ||||||| ||||| |||||||||| ||| ||| |||||||||||||||||||||||||| ||||    
T  13242801 ctcgtgaacttagatcagttgatagagatattgcataatttatgcaggggtcggggttcgaacc 13242738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 32190067 - 32190001
Alignment:
Q  143 gagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||||||||||||| ||  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  32190067 gagcttagttcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggacac 32190001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 3596275 - 3596321
Alignment:
Q  163 agacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||    
T  3596275 agacattgcataatttatgcaggggtcggggttcgaaccccggacac 3596321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 14663985 - 14664055
Alignment:
Q  139 tcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||| |||||||||||| ||  |||||| ||||||||||||||||| | | |||||||||| ||||||    
T  14663985 tcgtgagtttagttcagttggtagggacattgcataatttatgcaggggccagagttcaaaccccggacac 14664055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 1964379 - 1964424
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||    
T  1964379 gacattgcataatttatgcaggggccggggttcaaaccccggacac 1964424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 20919612 - 20919681
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  |||||| |||||||||||| |||| |||||||| ||||| ||||||    
T  20919612 cgtgagcttagctcagttggtagggacattgcataatttatgctggggccggggttcgaaccccggacac 20919681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 3154023 - 3154071
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    |||||| ||||||||||||||||  |||||||| |||||||||||||||    
T  3154023 gacattgcataatttatgcagggaccggggttcgaaccctggacactcc 3154071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 5521288 - 5521216
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||||||  || ||| |||| | |||||||||| || ||||| |||||||||||||||    
T  5521288 cgtgagcttagctcagttgatagggatattgcatattatatgcaggggccgaggttcgaaccctggacactcc 5521216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 27016279 - 27016351
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| ||  || ||| |||| | ||| |||||||||| |||| |||||||||||||||    
T  27016279 cgtgagcttagttcagttggtatggatattgcatattatatacaggggtcggagttcgaaccctggacactcc 27016351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 40535517 - 40535445
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||| || ||| |||| | |||||||||| |||||||| ||||| |||||||||    
T  40535517 cgtgagcttagctcagttggtacggatattgcatattatatgcaggggccggggttcgaaccccggacactcc 40535445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 14803037 - 14802999
Alignment:
Q  166 catttcataatttatgcaggggtcggggttcaaaccctg 204  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  14803037 cattgcataatttatgcaggggtcggggttcgaaccctg 14802999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 35429670 - 35429624
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggg 186  Q
    ||||||||||| ||||||| || ||||||| ||||||||||||||||    
T  35429670 cgtgagcttagctcagttggtagagacattgcataatttatgcaggg 35429624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 7661466 - 7661421
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcagg 185  Q
    ||||||||||| ||| |||||| ||||||| |||||||||||||||    
T  7661466 cgtgagcttagctcacttgatagagacattgcataatttatgcagg 7661421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 2289612 - 2289684
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||   | ||| |||| | |||||||||||| |||||| |||||||||||||||    
T  2289612 cgtgagcttagctcagttggtaggaatattgcatattatatgcaggggtcagggttcgaaccctggacactcc 2289684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 20296420 - 20296492
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||||||  || ||| |||| | |||||||| | |||||||| ||||| |||||||||    
T  20296420 cgtgagcttagctcagttgataaggatattgcatattatatgcaggagccggggttcgaaccccggacactcc 20296492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 22653712 - 22653640
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  22653712 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 22653640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 44694685 - 44694749
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||| ||||  |||||||||| ||||| | |||||| |||||| || |||||||||||||||    
T  44694685 ctcgtgaacttaactcagttgatatagacaatgcataatatatgcaaggctcggggttcaaaccc 44694749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 12770372 - 12770439
Alignment:
Q  142 tgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||| ||||||||||  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  12770372 tgagcttagctcagttgatagggacattgcataatttatgcaggggccggggttcgaaccccggacac 12770439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 20872534 - 20872470
Alignment:
Q  132 atagttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    |||||||  |||||||||| ||||||||||  |||||| ||||||||||||||||||||| ||||    
T  20872534 atagttcctgtgagcttagctcagttgatagggacattgcataatttatgcaggggtcggagttc 20872470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 11231424 - 11231491
Alignment:
Q  142 tgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||| |||||||| |  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  11231424 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacac 11231491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 481013 - 481082
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  |||||| ||||||||||||||||| || ||||| ||||| ||||||    
T  481013 cgtgagcttagctcagttggtagggacattgcataatttatgcaggggccgcggttcgaaccccggacac 481082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 2792781 - 2792853
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||||||  || ||| |||| | |||||||||| |||||||| ||||| |||||||||    
T  2792781 cgtgagcttagctcagttgatagggatattgcatattatatgcaggggccggggttcgaaccccggacactcc 2792853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 43980381 - 43980310
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactc 211  Q
    ||||||||||||||||||| ||  || ||| |||| | ||||||||| ||||||||| ||||| ||||||||    
T  43980381 cgtgagcttagttcagttgttagggatattgcatattatatgcagggatcggggttcgaaccccggacactc 43980310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 44156716 - 44156783
Alignment:
Q  142 tgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||  ||| ||| || ||||||| ||||||||||||||||| ||| |||| ||||||||||||    
T  44156716 tgagcttaactcaattggtagagacattgcataatttatgcaggggacggagttcgaaccctggacac 44156783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 10200751 - 10200677
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||| ||||||| || ||| ||| |||| | |||||||| | |||||||| ||||| |||||||||    
T  10200751 ctcgtgagcttagctcagttggtagagatattgcatattatatgcaggagccggggttcgaaccccggacactcc 10200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 25890477 - 25890403
Alignment:
Q  135 gttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||| |||||||||| | ||||| ||  |||||| ||||||||||||| ||| |||||||| ||||| ||||||    
T  25890477 gttcttgtgagcttagcttagttggtagggacattgcataatttatgcaagggccggggttcgaaccccggacac 25890403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 26192785 - 26192715
Alignment:
Q  139 tcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||||||||||||||||| ||  || ||| |||| | ||||||| ||||||||||| ||||| ||||||    
T  26192785 tcgtgagcttagttcagttggtagggatattgcatattatatgcagaggtcggggttcgaaccccggacac 26192715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 32223943 - 32223898
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgca 183  Q
    |||||||||||||||||||||||| ||||| | |||||| ||||||    
T  32223943 ctcgtgagcttagttcagttgatagagacaatgcataatatatgca 32223898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 35939489 - 35939558
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| ||||||||||||| |||||||    
T  35939489 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcaaaccgtggacac 35939558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 550327 - 550359
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttc 196  Q
    |||||| ||||||||||||||||||||||||||    
T  550327 gacattgcataatttatgcaggggtcggggttc 550359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 7948386 - 7948430
Alignment:
Q  152 tcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    |||||||||| ||||||| |||||| ||||||||||| |||||||    
T  7948386 tcagttgatagagacattacataatatatgcaggggttggggttc 7948430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 8265270 - 8265342
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||||| |||||| ||||| |||||||||    
T  8265270 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggtcagggttcgaaccccggacactcc 8265342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 19163600 - 19163536
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||||| ||||||| ||  |||| | ||||||||||||| ||  ||||||||||||||    
T  19163600 ctcgtgagcttagctcagttggtatggacaatgcataatttatgcaaggtccggggttcaaaccc 19163536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 23178959 - 23178887
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| |||||||| ||||| |||||||||    
T  23178959 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacactcc 23178887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 23858199 - 23858271
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| ||| |||| |||||||||||||||    
T  23858199 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggagttcgaaccctggacactcc 23858271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 39587549 - 39587621
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| || ||| ||| |||  | ||| ||||||||||| ||| |||||||||||||||    
T  39587549 cgtgagcttagctcagttggtagagatattgcattttatattcaggggtcgggattcgaaccctggacactcc 39587621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 43846962 - 43847006
Alignment:
Q  165 acatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||||    
T  43846962 acattgcataatttatgcaggggtcgatgttcgaaccctggacac 43847006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 31401319 - 31401244
Alignment:
Q  134 agttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||| ||||||||||| ||||||||||  |||||| ||||||||||||||| | || ||||||||||| ||||||    
T  31401319 agttcccgtgagcttagctcagttgatagggacattgcataatttatgcaggagccgaggttcaaaccccggacac 31401244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 36666644 - 36666575
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  36666644 cgtgagcttagctcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggacac 36666575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 24084076 - 24084000
Alignment:
Q  133 tagttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| ||||||||||| | |||||| | ||||||| ||||||||||| |||||  ||||||||||||||| ||||    
T  24084076 tagttcccgtgagcttagcttagttgacatagacattgcataatttatgtaggggcgggggttcaaaccctgaacac 24084000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 11065122 - 11065185
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccct 203  Q
    ||||||||||| |||| ||||| ||| ||| |||| | ||||||||||||||||||||||||||    
T  11065122 cgtgagcttagctcagatgatagagatattgcatattatatgcaggggtcggggttcaaaccct 11065185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 8741475 - 8741537
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||||||||||| ||  |||||| |||||||||||||||||  ||||||| |||||    
T  8741475 cgtgagcttagttcagttggtagggacattacataatttatgcaggggcaggggttcgaaccc 8741537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 10632719 - 10632765
Alignment:
Q  163 agacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||    
T  10632719 agacattgcataatttatgcaggggtcggggttcgaaccccggacac 10632765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 33843259 - 33843201
Alignment:
Q  144 agcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||| |||||||||| ||| ||| |||||||||||||| ||||||||||| |||||    
T  33843259 agcttagctcagttgatagagatattgcataatttatgcagaggtcggggttcgaaccc 33843201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 33950720 - 33950778
Alignment:
Q  144 agcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||| |||||||||| ||| ||| |||||||||||||| ||||||||||| |||||    
T  33950720 agcttagctcagttgatagagatattgcataatttatgcagaggtcggggttcgaaccc 33950778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 13401597 - 13401658
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||||||||||||| ||||| | |||||| |||| | || |||||||||||||||    
T  13401597 gtgagcttagttcagttgatagagacaatgcataatatatgtaaggttcggggttcaaaccc 13401658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 23991308 - 23991263
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||    
T  23991308 gacattgcataatttatgcaggggccggggttcgaaccctggacac 23991263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 8865856 - 8865928
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | ||||||||||||||| ||| |||||||||||||||    
T  8865856 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggtcgggattcgaaccctggacactcc 8865928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 11249507 - 11249456
Alignment:
Q  151 ttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    |||| ||||||  |||||| ||||||||||||||||||||||||| ||||||    
T  11249507 ttcaattgatagggacattgcataatttatgcaggggtcggggtttaaaccc 11249456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 24874140 - 24874187
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcagggg 187  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||||||    
T  24874140 cgtgagcttagctcagttgatagggacattgcataatttatgcagggg 24874187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 40800331 - 40800281
Alignment:
Q  139 tcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtc 189  Q
    ||||||||||||||||||||||| ||||||| ||| || |||| |||||||    
T  40800331 tcgtgagcttagttcagttgatagagacattgcattatatatgtaggggtc 40800281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 1247258 - 1247319
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    |||||||||  ||||||||||  || ||| |||||||||||||||||||| ||||| |||||    
T  1247258 gtgagcttaactcagttgataaggatattgcataatttatgcaggggtcgaggttcgaaccc 1247319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 11333666 - 11333735
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||| ||||| ||||||| ||  |||||| ||||||||||||||||| ||| |||| ||||| ||||||    
T  11333666 cgtgaacttagctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacac 11333735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 11491687 - 11491756
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||| ||||| ||||||| ||  |||||| ||||||||||||||||| ||| |||| ||||| ||||||    
T  11491687 cgtgaacttagctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacac 11491756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 11860044 - 11860113
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| |||||||  | | ||||| ||||||||||  |||||||||||||| ||||| ||||||    
T  11860044 cgtgagcttagctcagttggcagaaacattgcataatttatataggggtcggggttcgaaccccggacac 11860113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 16997327 - 16997258
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| || ||||| | |||| |||||||||||| || ||||| ||||| ||||||    
T  16997327 cgtgagcttagctcagttggtagagacaatgcatattttatgcaggggccgaggttcgaaccccggacac 16997258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 18607884 - 18607815
Alignment:
Q  133 tagttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    |||| ||||||||||||| | ||||| ||  |||||| |||||||||||||||||  ||||||| |||||    
T  18607884 tagtcctcgtgagcttagctgagttggtagggacattgcataatttatgcaggggctggggttcgaaccc 18607815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 24910515 - 24910474
Alignment:
Q  171 cataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| |||||| ||||| |||||||||    
T  24910515 cataatttatgcaggggtcagggttcgaaccccggacactcc 24910474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 25532965 - 25533034
Alignment:
Q  133 tagttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    |||| ||||||||||||||||||||| ||  |||| | |||||| |||||| ||  ||||||||||||||    
T  25532965 tagtcctcgtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 25533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 42490478 - 42490409
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  || ||| |||| | ||||||||||||||||||| ||||| ||||||    
T  42490478 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggtcggggttcgaaccccggacac 42490409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 18534003 - 18534075
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| || ||| ||| |||| | |||| ||| |||||||||| ||||| |||||||||    
T  18534003 cgtgagcttagctcagttggtagagatattgcatattatatgtaggagtcggggttcgaaccccggacactcc 18534075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 22563388 - 22563460
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| |||||||| ||||| |||||||||    
T  22563388 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacactcc 22563460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 24983463 - 24983499
Alignment:
Q  165 acatttcataatttatgcaggggtcggggttcaaacc 201  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  24983463 acatttcataatatatgcagcggtcggggttcaaacc 24983499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 27533240 - 27533304
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||||| ||||||| ||  |||| | |||||| |||||| || |||||||||||||||    
T  27533240 ctcgtgagcttagatcagttggtagggacaatgcataatatatgcaaggttcggggttcaaaccc 27533304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 32594253 - 32594325
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  32594253 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 32594325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 44579884 - 44579928
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcag 184  Q
    ||||||||||| |||||||||| |||||||  |||||||||||||    
T  44579884 cgtgagcttagctcagttgatagagacattgtataatttatgcag 44579928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 7462831 - 7462900
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||  | ||||||||  ||||||  ||||||||||||||||||||||||| ||||||||||||    
T  7462831 cgtgagcttaacttagttgatagggacattgtataatttatgcaggggtcggggttcgaaccctggacac 7462900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 35241398 - 35241462
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctg 204  Q
    ||||||||||||||||||| || ||| ||| |||| | ||||||||||||||||||| |||||||    
T  35241398 cgtgagcttagttcagttggtagagatattgcatattatatgcaggggtcggggttcgaaccctg 35241462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 41083604 - 41083549
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    ||||| |||| ||||||| || ||||||| ||||||||||||||||||||||||||    
T  41083604 gtgagtttagctcagttggtagagacattgcataatttatgcaggggtcggggttc 41083549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 32550179 - 32550240
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    |||||||||||||||||| || ||||||| ||||||||||||| |||  ||||||| |||||    
T  32550179 gtgagcttagttcagttggtagagacattgcataatttatgcatgggcaggggttcgaaccc 32550240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 36888463 - 36888391
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  36888463 cgtgagcttagttcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 36888391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 35113030 - 35112959
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactc 211  Q
    ||||||||||||||||||||||  || ||| |||| | ||||||||||| ||||||| ||| | ||||||||    
T  35113030 cgtgagcttagttcagttgatagggatattgcatattatatgcaggggttggggttcgaactccggacactc 35112959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 28758475 - 28758425
Alignment:
Q  151 ttcagttgatacagacatttcataatttatgcaggggtcggggttcaaacc 201  Q
    |||||||| ||  |||||| ||||||||||||||| |||||||||||||||    
T  28758475 ttcagttggtagggacattgcataatttatgcaggagtcggggttcaaacc 28758425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 38129071 - 38129037
Alignment:
Q  178 tatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| |||||||||||||||    
T  38129071 tatgcaggggtcggggttcgaaccctggacactcc 38129037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 3198329 - 3198398
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||||||| ||  |||||| |||||| ||||||||||| | ||||| ||||| ||||||    
T  3198329 cgtgagcttagctcagttggtagggacattgcataatatatgcaggggttgaggttcgaaccccggacac 3198398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 18928714 - 18928783
Alignment:
Q  132 atagttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaacc 201  Q
    ||||| || |||||||||| ||||||| ||  || ||| ||||||||||||||||||||| |||| ||||    
T  18928714 atagtccttgtgagcttagctcagttggtagggatattgcataatttatgcaggggtcggtgttcgaacc 18928783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 20501397 - 20501446
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtc 189  Q
    ||||||||||  ||||||| || ||||||| |||||||||||||||||||    
T  20501397 cgtgagcttaactcagttggtagagacattgcataatttatgcaggggtc 20501446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 24456215 - 24456260
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| ||||||||||||||||||||| |||| ||||| ||||||    
T  24456215 gacattgcataatttatgcaggggtcggagttcgaaccccggacac 24456260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 10905166 - 10905134
Alignment:
Q  178 tatgcaggggtcggggttcaaaccctggacact 210  Q
    ||||||||||||||||||| |||||||||||||    
T  10905166 tatgcaggggtcggggttcgaaccctggacact 10905134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 11897250 - 11897322
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| |||||||||| ||||| |||||||||    
T  11897250 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccggacactcc 11897322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 17545240 - 17545168
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||||| |||||||| ||||| |||||||||    
T  17545240 cgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacactcc 17545168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 34436848 - 34436912
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||||| ||||||| ||  |||| | |||||| |||||| ||| ||||||||||||||    
T  34436848 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagggccggggttcaaaccc 34436912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 36124401 - 36124473
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||||||   | ||| |||| | ||||||||||||||||||| || || |||||||||    
T  36124401 cgtgagcttagctcagttgataggaatattgcatattatatgcaggggtcggggttcgaatcccggacactcc 36124473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 4237047 - 4236979
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||||||||||| ||  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  4237047 cgtgagcttagttcagttggtagggacattgcataatttatgcagggg-cggggttcgaaccccggacac 4236979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 32776214 - 32776282
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||||||| ||||||| ||  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  32776214 gtgagcttagctcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggacac 32776282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 30779637 - 30779566
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||||| ||||||| ||  || ||| |||| | ||||||||||||||||||| ||||||||||||    
T  30779637 ctcgtgagcttagctcagttggtagggatattgcatattatatgcaggggtcggggttcgaaccctggacac 30779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 4227812 - 4227743
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| |||| ||||||| ||  |||||| |||||||||||||||||||||||||| ||| | ||||||    
T  4227812 cgtgagtttagctcagttggtagggacattgcataatttatgcaggggtcggggttcgaactccggacac 4227743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 11995133 - 11995202
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||||||||||||||  |||||| ||||||||||| || || || ||||||||| | ||||||    
T  11995133 cgtgagcttagttcagttgatagggacattgcataatttatgtagaggccgaggttcaaactccggacac 11995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 24303392 - 24303461
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| |||||||  |  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  24303392 cgtgagcttagctcagttggcagggacattgcataatttatgcaggggccggggttcgaaccccggacac 24303461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 41411673 - 41411626
Alignment:
Q  162 cagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||| ||| |||||||||||||||| ||||||||||||||| ||||||    
T  41411673 cagatattgcataatttatgcagggttcggggttcaaaccccggacac 41411626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 44764722 - 44764794
Alignment:
Q  138 ctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||||||||   |||||| ||||| |||||||||    
T  44764722 ctcgtgagcttagctcagttggtagggacattgcataatttatgcagggg--cgggttcgaaccccggacactcc 44764794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 17729031 - 17729065
Alignment:
Q  178 tatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| |||||||||||||||    
T  17729031 tatgcaggggtcggggttcgaaccctggacactcc 17729065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 19030260 - 19030294
Alignment:
Q  178 tatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||||| |||||||||||||||    
T  19030260 tatgcaggggtcggggttcgaaccctggacactcc 19030294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 19222630 - 19222585
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  19222630 gacattgcataatttatgcaggggccggggttcgaaccccggacac 19222585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 34102679 - 34102610
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||||||||||| ||  || ||| |||| | |||||||||| |||||||| ||||| ||||||    
T  34102679 cgtgagcttagttcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacac 34102610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 42785932 - 42785965
Alignment:
Q  176 tttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||||||||||||| ||||||||||||    
T  42785932 tttatgcaggggtcggggttcgaaccctggacac 42785965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 46845039 - 46844970
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||||| ||| |||  |  |||||| ||||||||||||||||||||| |||| ||||| ||||||    
T  46845039 cgtgagcttagctcaattggcagggacattgcataatttatgcaggggtcggagttcgaaccccggacac 46844970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 49983776 - 49983707
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||| ||||| ||||||| ||  ||||||  ||||||||||||||||| ||||||| ||||| ||||||    
T  49983776 cgtgaacttagctcagttggtagggacattgtataatttatgcaggggttggggttcgaaccccggacac 49983707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 54408594 - 54408549
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  54408594 gacattgcataatttatgcagaggtcggggttcgaaccccggacac 54408549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 2106038 - 2106082
Alignment:
Q  152 tcagttgatacagacatttcataatttatgcaggggtcggggttc 196  Q
    |||||||||| ||||||| |||| | |||||||||||||||||||    
T  2106038 tcagttgatagagacattgcatattatatgcaggggtcggggttc 2106082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 26880203 - 26880235
Alignment:
Q  164 gacatttcataatttatgcaggggtcggggttc 196  Q
    |||||| ||||||||||||||||||||||||||    
T  26880203 gacattgcataatttatgcaggggtcggggttc 26880235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 47098512 - 47098580
Alignment:
Q  134 agttctcgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||| ||||| ||||| ||||||||||  ||||||  |||||||||||||||| || ||||| |||||    
T  47098512 agttcccgtgaacttagctcagttgatagggacattgtataatttatgcaggggccgaggttcgaaccc 47098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 48515452 - 48515384
Alignment:
Q  141 gtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    |||||||||  ||||||| ||  || ||| |||||||||||||||||||| ||||| ||||| ||||||    
T  48515452 gtgagcttaactcagttggtagggatattccataatttatgcaggggtcgaggttcgaaccccggacac 48515384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 49375749 - 49375677
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||  ||||||| ||  |||||| |||||||||||||||||  || |||| ||||| |||||||||    
T  49375749 cgtgagcttaactcagttggtagggacattacataatttatgcaggggctggcgttcgaaccccggacactcc 49375677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 3028 - 2961
Alignment:
Q  142 tgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||||| |||||||| |  |||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  3028 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacac 2961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 28885 - 28820
Alignment:
Q  144 agcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacac 209  Q
    ||||||| ||||||||||  |||||| |||| |||||||||||| |||||||| ||||| ||||||    
T  28885 agcttagctcagttgatagggacattacatactttatgcaggggccggggttcgaaccccggacac 28820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 15007 - 15069
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccc 202  Q
    ||||||||||| ||||||| ||  |||||| |||||||||||||||||||  ||||| |||||    
T  15007 cgtgagcttagctcagttggtagggacattgcataatttatgcaggggtcatggttcgaaccc 15069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 24413 - 24454
Alignment:
Q  171 cataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||||||||| |||||||| ||||| |||||||||    
T  24413 cataatttatgcaggggccggggttcgaaccccggacactcc 24454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 88 - 16
Alignment:
Q  140 cgtgagcttagttcagttgatacagacatttcataatttatgcaggggtcggggttcaaaccctggacactcc 212  Q
    ||||||||||| ||||||| ||  || ||| |||| | |||||||| | |||||||| |||||||||||||||    
T  88 cgtgagcttagctcagttggtagggatattgcatattatatgcaggagccggggttcgaaccctggacactcc 16  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 4319 - 4394
Alignment:
Q  137 tctcgtgagcttagttcagttgatacagacatttcataatt-tatgcaggggtcggggttcaaaccctggacactcc 212  Q
    |||||||||| ||| ||||||||||  |||| | ||| ||| ||||||||||||||||||| ||||| |||||||||    
T  4319 tctcgtgagcatagctcagttgatag-gacaatacattattatatgcaggggtcggggttcgaaccccggacactcc 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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