View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_high_26 (Length: 206)
Name: NF3042_high_26
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 55363714 - 55363538
Alignment:
| Q |
1 |
tacagggggtaaagacctattaacnnnnnnnaacaatacaccaataagttaatcaattatttatttataaaattatatgcatgattaatgaattatgaa- |
99 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55363714 |
tacagggagtaaagacctattaactttttttaacaatacaccaataagttaatcagttatttatttataaaattatatgcatgattaatgaattatgaat |
55363615 |
T |
|
| Q |
100 |
-tataatggagaggtttttccttaattannnnnnnnacatgaaagtctaaattagttcataaatatagttcagttggta |
177 |
Q |
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||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||||| |
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| T |
55363614 |
atataatggagaggttttgccttaatt--tctttttaaatgaaagtctaaattagttcataagcatagttcagttggta |
55363538 |
T |
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