View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_high_3 (Length: 622)
Name: NF3042_high_3
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 285 - 603
Target Start/End: Complemental strand, 26185202 - 26184875
Alignment:
| Q |
285 |
tcagggtcgattttagcataaggtatagtccaaagactccaaacttttactaggtctatgnnnnnnnncatacttatgatgacaatttgtagaactttca |
384 |
Q |
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| T |
26185202 |
tcagggtcgattttagcataaggtatagtccaaagacaccaaacttttaccagatctatgaaaaaaa-catacttatgatgacaatttgtagaactttca |
26185104 |
T |
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| Q |
385 |
acacaatggtagccatcacttatttgttttagattaaaaat----------gtaataatttcactgaattattgatactagttttaaaaaagattgattc |
474 |
Q |
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| T |
26185103 |
acacaatggtagccatcacttatttgttttagattaaaaataattaaaaatgtaataatttcactgaaatattgatactagttttaaaaaagattgattc |
26185004 |
T |
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| Q |
475 |
taagttttttaataccnnnnnnnctactttttcatagacatttcatgtacattttgaatgaataaagcattgacatatataggggaatctaaatcagatg |
574 |
Q |
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| T |
26185003 |
taagttttttaataccaaaaaaattactttttcatagacatttcatgtacattttgaatgaataaagcattgacatatataggggaatctaaatcagatg |
26184904 |
T |
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| Q |
575 |
tacccctcattattggagtaggttctatc |
603 |
Q |
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| T |
26184903 |
tacccctcattattggagtaggttctatc |
26184875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 26185422 - 26185232
Alignment:
| Q |
96 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
195 |
Q |
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| T |
26185422 |
aaggctaaattttttcttgacagtatcctctaatcatatcttgcagatgtttgttgaaataatttactataaagtaatataacaacgtaacatagtaatt |
26185323 |
T |
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| Q |
196 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaag-tataatttaaattggtcccattgaagcatacacgtccttatt |
285 |
Q |
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| T |
26185322 |
aatgagatattttatgaaaaacataataatctaccacaaccgtttaagttataatttaaattggtcccattgaagcatacacgtccttatt |
26185232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 26185471 - 26185415
Alignment:
| Q |
15 |
ataggtatccaaattagaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
71 |
Q |
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| T |
26185471 |
ataggtatccaaattaaaacatgatatgaaataaaaagataaaaaatgcaaggctaa |
26185415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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