View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_high_4 (Length: 548)
Name: NF3042_high_4
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 40652338 - 40652063
Alignment:
| Q |
20 |
gaaaacccagttgtcttattccttgagcgagtagggctagttgagaacgaaccactctttcgagacattttgcgttaactttgttattgagtactatagc |
119 |
Q |
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| T |
40652338 |
gaaaacccagttgtcttattccttgagcgagtagggctagttgagaacgaaccactctttcgagacattttgcgttaactttgttattgagtactatagc |
40652239 |
T |
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| Q |
120 |
tgaatacaaatcaaatgttagagtaatgaaaacatgcatgattgaaacaaattcaaaagattatatgaaaactcaccaaaaggggaaataataaaaatga |
219 |
Q |
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| T |
40652238 |
tgaatacaaatcaaatgttagagtaatgaaaacatgcatgattgaaacaaattcaaaagattatatg-aaactcaccaaaaggggaaataataaaaatga |
40652140 |
T |
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| Q |
220 |
tcggagagttaatcgggattggaggaatggaagtggtcgggaaagtgatcggagaatggaaccggtgaccagccggc |
296 |
Q |
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| T |
40652139 |
tcggagagttaatcgggattggaggaatggaagtggtcgggaaagtgatcggagaatggaaccggtgaccagccggc |
40652063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 332 - 439
Target Start/End: Complemental strand, 40652027 - 40651920
Alignment:
| Q |
332 |
gagggaagattgcattgtgaggatggttggaagaaaaaaggcgggacgaaaggagaggagaacttgaagccgattttaatggctacaatcgcactgctgc |
431 |
Q |
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| T |
40652027 |
gagggaagattgcattgtgaggatggttggaagaaaaaaggcgggacgaaaggagaggagaacttgaagccgattttaatggctacaatcgcactgctgc |
40651928 |
T |
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| Q |
432 |
acgtcacc |
439 |
Q |
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| T |
40651927 |
acgtcacc |
40651920 |
T |
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