View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_high_5 (Length: 430)
Name: NF3042_high_5
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 12844159 - 12844555
Alignment:
| Q |
18 |
acatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgt |
117 |
Q |
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| T |
12844159 |
acatggtaagtgcgaaggttttcatatctgccacgacctagatcggtgacggtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgt |
12844258 |
T |
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| Q |
118 |
tcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaac |
217 |
Q |
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| T |
12844259 |
tcgttcttttctatcactgtaatc---agaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaac |
12844355 |
T |
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| Q |
218 |
caatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaattgtg |
317 |
Q |
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| T |
12844356 |
caatttcttcgtttcagagtttccacag-tttttttatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaattgtc |
12844454 |
T |
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| Q |
318 |
tatgannnnnnnnnnnnnnnnngttgtggcaattggctatgtttctatcactatatgttgagcatactacggttagcacaaggctataggtctttggttc |
417 |
Q |
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| T |
12844455 |
tatgatttttcatttttttttt-ttttggcaattggctatgtttctatcactatatgttgagcatactacggttagcacaaggctataggtctttggttc |
12844553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 12861358 - 12861065
Alignment:
| Q |
18 |
acatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttggcgcgt |
117 |
Q |
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| T |
12861358 |
acatggtaagtgcgaaggttttcatatctgtcacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttgtcgcgt |
12861259 |
T |
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| Q |
118 |
tcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaac |
217 |
Q |
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| T |
12861258 |
tcgttcttttctatcactgtaatc---agaatgaaagaaacggttagagcaatttggaatttcccgcgccaggatttatttataaaacggttgtaacaac |
12861162 |
T |
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| Q |
218 |
caatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaatt |
314 |
Q |
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| T |
12861161 |
caatttcttcgtttcagagtttccacagttttttttatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaatt |
12861065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 12861000 - 12860961
Alignment:
| Q |
371 |
tatgttgagcatactacggttagcacaaggctataggtct |
410 |
Q |
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| T |
12861000 |
tatgttgagcatactacggttagcaaagggctataggtct |
12860961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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