View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_high_8 (Length: 395)
Name: NF3042_high_8
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 44998791 - 44998411
Alignment:
| Q |
1 |
tcaattgaaatatatatcaaaaatgttgttagggcatggtatagtataccttggtagggcatttctcaccgcgttccttagcaatggcttgaacctgaat |
100 |
Q |
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|||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44998791 |
tcaattaaaatatatatgaaaaatgttgttcgggcatggtatagtataccttggtagggcatttctcaccgcgttccttagcaattgcttgaacctgaat |
44998692 |
T |
|
| Q |
101 |
caagaactcacgacattgttcatagagatgaaaaagataatctagaccgttctttttgccacgtgcaacttccccaggctctgtcacaatgaatggatgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998691 |
caagaactcacgacattgttcatagagatgaaaaagataatctagaccgttctttttgccacgtgcaacttccccaggctctgtcacaatgaatggatgt |
44998592 |
T |
|
| Q |
201 |
tctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatgatcaccatttcccttcatcttcatccttc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998591 |
tctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatgatcaccatttcccttcatcttcatccttc |
44998492 |
T |
|
| Q |
301 |
tcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtactccctcctccgcttcccaccgcct |
381 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998491 |
tcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtactccctcctccgcttcccaccgcct |
44998411 |
T |
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