View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_10 (Length: 371)
Name: NF3042_low_10
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 39679786 - 39679436
Alignment:
| Q |
10 |
agcagaaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagtattaaaatgttcgtcttct |
109 |
Q |
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| T |
39679786 |
agcagaaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagtattaaaatgttcgtcttct |
39679687 |
T |
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| Q |
110 |
cgaaggagtggtaagtattttgcaaccgcgagtggcgcactttgatcaaaacggatttgatctttccaccattcgcgtaaactatcagacgaacctgata |
209 |
Q |
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| T |
39679686 |
cgaaggagtggtaagtattttgcaaccgcgagtggcgcgctttgatcaaaacggatttgatctttccaccattcgcgtaaactatcagacgaacctgata |
39679587 |
T |
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| Q |
210 |
ccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttgagtactgaatcttgtgctct |
309 |
Q |
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| T |
39679586 |
ccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttgagtactgaatcttgtgctct |
39679487 |
T |
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| Q |
310 |
tgacatctttttccttcttgatgcttcttgttttgcttgttgcacaggttc |
360 |
Q |
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| T |
39679486 |
tgacatctttttccttcttgatgcttcttgttttgcttgttgctcaggttc |
39679436 |
T |
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Back To:
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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 351
Target Start/End: Complemental strand, 38052169 - 38051988
Alignment:
| Q |
170 |
tctttccaccattcgcgtaaactatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatcca |
269 |
Q |
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| T |
38052169 |
tctttccaccattcacgcaagctttctgaagaacctgttactggttttcctttctctggaacaataccatagacaaaaccttgagctttgcatattgtca |
38052070 |
T |
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| Q |
270 |
tgatctttgccatgtatttgagtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttg |
351 |
Q |
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| T |
38052069 |
taatcttcatcatgtatttgagaattgaatcttgtgctcttgacatctttttccttcttgatgcctcatcttttgcttgttg |
38051988 |
T |
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