View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_11 (Length: 342)
Name: NF3042_low_11
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 32864085 - 32863765
Alignment:
| Q |
9 |
gatatgaatatttaatcctcctatccatgattgtccataattctacatctgttgcatatttaaaataaaaattctttaaagtactactgtgagtatatat |
108 |
Q |
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| T |
32864085 |
gatataaatatttaatcctcctatccatgattgtccataattctacatctgttgcatatttaaaataaaaattctttaaagtactactgtgagtatatat |
32863986 |
T |
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| Q |
109 |
atttatatttgctatactttggcatgaaattgacatctgtttggactttgaaaaatcaatcatatccacaatcttattacaaa---tagtagattaaagg |
205 |
Q |
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| T |
32863985 |
atttatatttgctatactttggcatgaaattgacatctgtttggactttgaaaaatcaatcatatccacaatcttattacaaatactagtaaattaaagg |
32863886 |
T |
|
| Q |
206 |
tagagacaaactgctttttgttagtataatataatatgccgactaaaacaatatttttcatatgatagaaaatcaatacttgttggttttgttgcatttg |
305 |
Q |
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| T |
32863885 |
tagagacaaactgctttttgttagtataatataatatgccgactaaaacaatatttttcatatgatagaaaatcaatacttgttggttttgttgcatttg |
32863786 |
T |
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| Q |
306 |
aatgatatttccttttagtaa |
326 |
Q |
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| T |
32863785 |
aatgatatttccttttagtaa |
32863765 |
T |
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