View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_12 (Length: 341)
Name: NF3042_low_12
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 139 - 329
Target Start/End: Original strand, 49977355 - 49977545
Alignment:
| Q |
139 |
caaaagaaaatattccatttcaataaaacctttgatataataataattttattatttttcggtttgatttgatttgtgattgttgtgtggttggtttggg |
238 |
Q |
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| T |
49977355 |
caaaagaaaatattccatttcaataaaacctttgatataataatatttttattatttttcggtttgatttgatttgttattgttgtgtggttggtttggg |
49977454 |
T |
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| Q |
239 |
tgcagagaaagaaacagagaagttgaacaatgctcgtcagctcctcttacgtaatgatcacaaccttgttgctcaagctgcccttcaccta |
329 |
Q |
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| T |
49977455 |
tgcagagaaagaaacagagaagttgaacaatgctcgtcagctcctcttacgtaatgatcacaaccttgttgctcaagctgcccttcaccta |
49977545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 49977235 - 49977304
Alignment:
| Q |
19 |
tttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagct |
88 |
Q |
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| T |
49977235 |
tttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagct |
49977304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 49953535 - 49953468
Alignment:
| Q |
21 |
tgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagct |
88 |
Q |
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| T |
49953535 |
tgttccctcaagttctgtaaatctcaggctcttgggggacacatgaaccgtcaccgccaaggctagct |
49953468 |
T |
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