View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_13 (Length: 321)
Name: NF3042_low_13
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 47712430 - 47712741
Alignment:
| Q |
1 |
tcgtccactgtaactccgccacctctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712430 |
tcgtccactgtaactccgccacctctccaccatctccatcccccaacgaccgaataatatcatgaggaagcaaagcaccagcagcgatcgtagtcttccc |
47712529 |
T |
|
| Q |
101 |
cactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712530 |
cactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaa |
47712629 |
T |
|
| Q |
201 |
ggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47712630 |
ggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaatggcaccaacacatccttcctcaaacgatcacgaaccc |
47712729 |
T |
|
| Q |
301 |
tataagtataat |
312 |
Q |
| |
|
|||||| ||||| |
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| T |
47712730 |
tataagcataat |
47712741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 4 - 312
Target Start/End: Original strand, 19795534 - 19795842
Alignment:
| Q |
4 |
tccactgtaactccgccacctctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccac |
103 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||| |||| |||| ||| ||||| || ||||||||||||||||||||||| || ||||||||||| | |
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| T |
19795534 |
tccactgcaactcagccacttctccaccatcttcatcatccaaagactctataatctcgtgaggaagcaaagcaccagcagcaatagtagtcttccctgc |
19795633 |
T |
|
| Q |
104 |
tttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaagga |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||| ||| |
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|
| T |
19795634 |
cttcacatcctccaagtacttctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtatgga |
19795733 |
T |
|
| Q |
204 |
atcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctat |
303 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
19795734 |
atcaaaccccattgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaccgatcacgaaccctat |
19795833 |
T |
|
| Q |
304 |
aagtataat |
312 |
Q |
| |
|
||| ||||| |
|
|
| T |
19795834 |
aagcataat |
19795842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 19786053 - 19785745
Alignment:
| Q |
4 |
tccactgtaactccgccacctctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccac |
103 |
Q |
| |
|
||||||| ||||| || || ||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||| || |||||||| || | |
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|
| T |
19786053 |
tccactgcaactcagcaacttctccaccatctccatcccccaaagactctataatctggtgaggaagcaaagcaccagcagcaatagtagtctttcctgc |
19785954 |
T |
|
| Q |
104 |
tttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaagga |
203 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||| ||||| || ||||||||| |
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|
| T |
19785953 |
cttcacatccttcaagtacttctcaaacctctccttatcatgcttcaaaaacttttccttataaaacttcatcgccacagaagcaactctattgtaagga |
19785854 |
T |
|
| Q |
204 |
atcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctat |
303 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
19785853 |
atcaaaccccattgattagcaccaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctat |
19785754 |
T |
|
| Q |
304 |
aagtataat |
312 |
Q |
| |
|
||| ||||| |
|
|
| T |
19785753 |
aagcataat |
19785745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 62 - 312
Target Start/End: Original strand, 15834899 - 15835149
Alignment:
| Q |
62 |
atgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctct |
161 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
15834899 |
atgaggaagcaaagcaccagcagccatagtagtcttccctgccttcacatcctgcaagtacttctcaaacctctcctcatcatgcttcaaaaacttctcc |
15834998 |
T |
|
| Q |
162 |
ttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctca |
261 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||||||||||||||||| | ||| ||||||||| |
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|
| T |
15834999 |
ttataaaactccatggccacagaagcaaccctattataaggaatcaaaccccattgattagccccaataaacacctcaggcaattgcaacgccttcctca |
15835098 |
T |
|
| Q |
262 |
acggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
312 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
15835099 |
acggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
15835149 |
T |
|
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