View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_14 (Length: 301)
Name: NF3042_low_14
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 14551785 - 14552045
Alignment:
| Q |
24 |
caatatcttctaggataaagataaaatattcggttattcaataaatcgaatttccgtttatatggtgaaagccaaacacggttgttctgggcaccgttga |
123 |
Q |
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| T |
14551785 |
caatatattctaggataaagataaaatatttggttattcaataaatcgaatttccgtttatatggtgaaagccaaacacggttgttctgggcaccgttga |
14551884 |
T |
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| Q |
124 |
ggcgttgaagcttttttccaatgttcaaactttttctcttccgcaatgcctttgccatatcaacaacctcattttctatcagattcctcaccactactat |
223 |
Q |
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| T |
14551885 |
ggcgttgaagctttt-tccaatgttcaaagtttttctcttccgcaatgcctttgccatatcaacaacctcattttctatcagattcctcaccactactat |
14551983 |
T |
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| Q |
224 |
cacttcagattcaaacccattcaccgtatcctacctcatccacaaatttggattctcacatg |
285 |
Q |
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| T |
14551984 |
cacttcagattcaaactcattcaccgtatcctacctcatccacaaatttggattctcacatg |
14552045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 14574948 - 14575022
Alignment:
| Q |
197 |
ttctatcagattcctcaccactactatcacttcagattcaaacccattcaccgtatcctacctcatccacaaatt |
271 |
Q |
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| T |
14574948 |
ttctctcagattcctcaccactgccatcacttccgattcaaattcattcgctgtatcctacctcatccacaaatt |
14575022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 14851008 - 14850956
Alignment:
| Q |
233 |
ttcaaacccattcaccgtatcctacctcatccacaaatttggattctcacatg |
285 |
Q |
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| T |
14851008 |
ttcaaacccattcaccgtatcctacctcatcgacaaattcggattctctcatg |
14850956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 15023419 - 15023471
Alignment:
| Q |
233 |
ttcaaacccattcaccgtatcctacctcatccacaaatttggattctcacatg |
285 |
Q |
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| T |
15023419 |
ttcaaacccattcatcgtatcctacctcattgacaaattcggtttctcacatg |
15023471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 14567040 - 14567084
Alignment:
| Q |
241 |
cattcaccgtatcctacctcatccacaaatttggattctcacatg |
285 |
Q |
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||||||| || ||||||||||||||||| ||||| |||||||||| |
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| T |
14567040 |
cattcactgtttcctacctcatccacaagtttgggttctcacatg |
14567084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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