View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_16 (Length: 281)
Name: NF3042_low_16
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_16 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 39679829 - 39680109
Alignment:
| Q |
1 |
gagaggggaatttctcctccctggtggcccacaggatcagaaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataaga |
100 |
Q |
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| T |
39679829 |
gagaggggaatttctcctccctggtggcccacaggatcagaaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataaga |
39679928 |
T |
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| Q |
101 |
aaccacatgaccttaaaaaggcatggaaagtttctgttttggctggtgttataaaacatatgtcacctgatttggagaaattaaggaagttggttactca |
200 |
Q |
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| T |
39679929 |
aaccacatgaccttaaaaaggcatggaaagtttctgttttggctggtgttataaaacatatgtcacctgatttggagaaattaaggaagttggttactca |
39680028 |
T |
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| Q |
201 |
gtcaaaaactttgcaagataagatgacagcaagagatagtgctacttggtctaaagttatgaatcaagaagaagctttgct |
281 |
Q |
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| T |
39680029 |
gtcaaaaactttgcaagataagatgaccgcaagagatagtgctacttggtctaaagttatgaatcaagaagaagctttgct |
39680109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 38052388 - 38052655
Alignment:
| Q |
14 |
ctcctccctggtggcccacaggatcagaaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataagaaaccacatgacct |
113 |
Q |
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| T |
38052388 |
ctcctccatggtggcctaatggaacagaacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgattt |
38052487 |
T |
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| Q |
114 |
taaaaaggcatggaaagtttctgttttggctggtgttataaaacatatgtcacctgatttggagaaattaaggaagttggttactcagtcaaaaactttg |
213 |
Q |
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| T |
38052488 |
gaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttgtctcctgatgttgataaagtgagaaggttagtgactcaatcaaagactttg |
38052587 |
T |
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| Q |
214 |
caagataagatgacagcaagagatagtgctacttggtctaaagttatgaatcaagaagaagctttgct |
281 |
Q |
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| T |
38052588 |
caacataagatgacagctaaagatagtgcaacttggtccaaagtaatgaaccaagaacaagctttgct |
38052655 |
T |
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