View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_18 (Length: 263)
Name: NF3042_low_18
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 43221745 - 43221987
Alignment:
| Q |
6 |
cagcacagaggtgagttgggaatgtgtcaaacccctcggacaagcatagagtcaatataagtttcattcctttttgacaatcatcagattcagacagagt |
105 |
Q |
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| T |
43221745 |
cagcacataggagagttgggaatgtgtcaaacccctcggacaagcatagagtcaatataagtttcattcctttttgacaatcatcagattcagacagagt |
43221844 |
T |
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| Q |
106 |
taaatcccctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaatct |
205 |
Q |
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| T |
43221845 |
taaatcccctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaatct |
43221944 |
T |
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| Q |
206 |
gcaataagagtatctgttttcctaacagcatcatgaaggactt |
248 |
Q |
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| T |
43221945 |
gcaataagagtatctgttttcctaacagcatcatgaaggactt |
43221987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 43231175 - 43231405
Alignment:
| Q |
18 |
gagttgggaatgtgtcaaacccctcggacaagcatagagtcaatataagtttcattcctttttgacaatcatcagattcagacagagttaaatcccctgt |
117 |
Q |
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| T |
43231175 |
gagttggaaatgtgtcaaacccctctgacaagcataaagtcaatataagcttcattcctttttgacaactatcagattcagacagagttaagtcccctgt |
43231274 |
T |
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| Q |
118 |
agattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaatctgcaataagagta |
217 |
Q |
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| T |
43231275 |
agattttgtgtaagcacgaagcaaaatgatccaccagaatccagagtcaacaggagcaactcttccgattgcactttcgccaaaatctgcaataagagta |
43231374 |
T |
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| Q |
218 |
tctgttttcctaacagcatcatgaaggactt |
248 |
Q |
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| T |
43231375 |
tctgttttcctaacggcatcatgcaggactt |
43231405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 55112520 - 55112614
Alignment:
| Q |
113 |
cctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaaatctgc |
207 |
Q |
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| T |
55112520 |
cctgtagattttgtgtatgcacgaagcaatatgatccaccaaaatccagaatcaacaggagcaaccctgcctattgcactttcaccaaaatctgc |
55112614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 28863339 - 28863251
Alignment:
| Q |
113 |
cctgtagattttgtgtaagcacgaagcaaaatgatccaccaaaatccagagtcaacaggagcaactcttccaattgcactttcaccaaa |
201 |
Q |
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|||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||| || || ||||||||| ||||||| |
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| T |
28863339 |
cctgtagactttgtgtaagcacgaagtaatataatccaccaaaatccagaatcaacaggagcaaccctgcctattgcacttccaccaaa |
28863251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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