View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3042_low_6 (Length: 417)

Name: NF3042_low_6
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3042_low_6
NF3042_low_6
[»] chr2 (4 HSPs)
chr2 (11-171)||(16752424-16752584)
chr2 (237-397)||(16752650-16752810)
chr2 (237-397)||(16757154-16757313)
chr2 (11-161)||(16756929-16757079)
[»] chr5 (11 HSPs)
chr5 (11-161)||(32740033-32740183)
chr5 (241-392)||(28475032-28475175)
chr5 (11-141)||(32762943-32763073)
chr5 (11-161)||(32767843-32767993)
chr5 (11-141)||(28474803-28474933)
chr5 (17-161)||(32651818-32651962)
chr5 (24-161)||(32656073-32656210)
chr5 (247-397)||(32763168-32763315)
chr5 (23-138)||(25469530-25469645)
chr5 (237-358)||(32557680-32557798)
chr5 (296-390)||(32740317-32740410)
[»] chr7 (4 HSPs)
chr7 (16-141)||(7969919-7970044)
chr7 (16-139)||(37577067-37577190)
chr7 (237-361)||(37577275-37577403)
chr7 (246-361)||(7969711-7969818)
[»] chr1 (4 HSPs)
chr1 (19-141)||(17583451-17583573)
chr1 (17-141)||(17591356-17591480)
chr1 (306-392)||(17583721-17583806)
chr1 (306-361)||(17591629-17591684)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 16752424 - 16752584
Alignment:
Q  11 cagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752424 cagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt 16752523  T
Q  111 ccaaacctctcaagctagaaatttgcataacttgcacaaaccccatggtactgactatctc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16752524 ccaaacctctcaagctagaaatttgcataacttgcacaaaccccgtggtactgactatctc 16752584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 16752650 - 16752810
Alignment:
Q  237 actctagcaatttatctcaaattcttcggtttttcacatgccaaaactaaggttgctagtgttttctatttttctatttttagaccagttcttgaaatat 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  16752650 actctagcaatttatctcaaattcttcggtttttcacatgccaaaactaaggttgttagtgttttctatttttctaattttagaccagctcttgaaatat 16752749  T
Q  337 cagtctcaaattttcttttattgatctaatgtcaattgtggtgcagatgcaaatcttcgta 397  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16752750 cagtctcaaattttcttttattgatttaatgtcaattgtggtgcagatgcaaatcttcgta 16752810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 16757154 - 16757313
Alignment:
Q  237 actctagcaatttatctcaaattcttcggtttttcacatgccaaaactaaggttgctagtgttttctatttttctatttttagaccagttcttgaaatat 336  Q
    ||||||||||||||| |||||||| ||  |||||| ||||| ||||||||| ||| |||||| | ||| ||||||| |||| ||||||||||||||||||    
T  16757154 actctagcaatttatttcaaattcatcattttttcgcatgc-aaaactaagattgttagtgtctactaattttctaattttggaccagttcttgaaatat 16757252  T
Q  337 cagtctcaaattttcttttattgatctaatgtcaattgtggtgcagatgcaaatcttcgta 397  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  16757253 cagtctcaatttttcttttattgatttaatgtcaactgtggtgcagatgcgaatcttcgta 16757313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 16756929 - 16757079
Alignment:
Q  11 cagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt 110  Q
    |||| ||||||||||||||||||||| |||| || |||| | || || |||||||||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  16756929 cagaaatgcaaactgaaattacactcgtttgcaaagaatttgcatcaagttactttagcaactctttcatcagagttccttgtgattccaattggttctt 16757028  T
Q  111 ccaaacctctcaagctagaaatttgcataacttgcacaaaccccatggtac 161  Q
    |  |||||||| |||| | |||||||||||||  ||||| ||||| |||||    
T  16757029 ctgaacctctcgagcttgtaatttgcataactcccacaacccccacggtac 16757079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 32740033 - 32740183
Alignment:
Q  11 cagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt 110  Q
    |||| ||| ||||||||||||||||||||||  | ||||||||||||| ||||||||| || ||||||| || |||||||| ||||||||  | ||||||    
T  32740033 cagatatgtaaactgaaattacactcttttgccaagaatgtccaacagattactttagcaaatctttcatcaaagttccttgtgattccatttagttctt 32740132  T
Q  111 ccaaacctctcaagctagaaatttgcataacttgcacaaaccccatggtac 161  Q
    |  ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  32740133 ctgaacctctcaagttagaaatttgcataacttgcgcaacccccatggtac 32740183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 392
Target Start/End: Original strand, 28475032 - 28475175
Alignment:
Q  241 tagcaatttatctcaaattcttcggtttttcacatgccaaaactaaggttgctagtgttttctatttttctatttttagaccagttcttgaaatatcagt 340  Q
    ||||| |||||||||||||| || |||||| | |||||||||||||||||| |||||||||        |||||||| ||  |||||||||||| |||||    
T  28475032 tagcattttatctcaaattcatcagtttttgaaatgccaaaactaaggttgttagtgtttt--------ctatttttggattagttcttgaaatgtcagt 28475123  T
Q  341 ctcaaattttcttttattgatctaatgtcaattgtggtgcagatgcaaatct 392  Q
    |||||||||||||||| |||| |||||  | |||||||||||||||||||||    
T  28475124 ctcaaattttcttttactgatttaatggtatttgtggtgcagatgcaaatct 28475175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 32762943 - 32763073
Alignment:
Q  11 cagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt 110  Q
    |||| |||||||||||||||||| |||||||| | ||| |||||||  ||| |||||| |||||||||| ||||||| ||| ||||||||  || |||||    
T  32762943 cagatatgcaaactgaaattacagtcttttgtgaagaacgtccaacgtgttgctttagcaactctttcatcagagtttcttgtgattccatttgcttctt 32763042  T
Q  111 ccaaacctctcaagctagaaatttgcataac 141  Q
    || |||||||||||||||| |||||||||||    
T  32763043 ccgaacctctcaagctagatatttgcataac 32763073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 32767843 - 32767993
Alignment:
Q  11 cagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt 110  Q
    |||| |||||||||||||||||| |||||||| |  |||||||| ||| ||||||||| ||||||| || ||||| ||||| ||||||||  ||| ||||    
T  32767843 cagacatgcaaactgaaattacagtcttttgtgaaaaatgtccagcagtttactttagcaactcttccatcagagctccttgtgattccagttggctctt 32767942  T
Q  111 ccaaacctctcaagctagaaatttgcataacttgcacaaaccccatggtac 161  Q
    |  |||| ||||||||||||||||||||| ||| || || |||||||||||    
T  32767943 ctgaaccactcaagctagaaatttgcatatcttacataacccccatggtac 32767993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 28474803 - 28474933
Alignment:
Q  11 cagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt 110  Q
    |||| |||||||||||  ||||| |||||||| | ||| |||||| ||||| |||||| ||||| |||| ||||||| ||| ||||||||  ||||||||    
T  28474803 cagatatgcaaactgactttacagtcttttgtgaagaacgtccaagaggttgctttagcaactccttcatcagagttgcttgtgattccatttggttctt 28474902  T
Q  111 ccaaacctctcaagctagaaatttgcataac 141  Q
    || |||||||||||||||| ||||| |||||    
T  28474903 ccgaacctctcaagctagatatttgtataac 28474933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 32651962 - 32651818
Alignment:
Q  17 tgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaac 116  Q
    ||||||||||||||||| |||||||  | | || ||||||  ||||||| || || ||||||| ||||||||||| ||||||||  |||||||||  |||    
T  32651962 tgcaaactgaaattacagtcttttggtaaggatttccaacgtgttacttcagcaaatctttcatcagagttccttgtgattccatttggttcttctgaac 32651863  T
Q  117 ctctcaagctagaaatttgcataacttgcacaaaccccatggtac 161  Q
    |||| |||||||||||||||||| | | || || |||||||||||    
T  32651862 ctctgaagctagaaatttgcatagcatccataacccccatggtac 32651818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 32656210 - 32656073
Alignment:
Q  24 tgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaacctctcaa 123  Q
    |||||||||| ||||| |  | ||||||||||  ||||   |||| |||||||||  | ||||| ||| ||||||||  ||||||||   || |||||||    
T  32656210 tgaaattacagtctttcgcgaagaatgtccaatcggttgtattagcaactctttcgtcggagttgcttgtgattccatttggttcttttgaagctctcaa 32656111  T
Q  124 gctagaaatttgcataacttgcacaaaccccatggtac 161  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32656110 gctagaaatttgcataacttgcataaaccccatggtac 32656073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 397
Target Start/End: Original strand, 32763168 - 32763315
Alignment:
Q  247 tttatctcaaattcttcggtttttcacatgccaaaactaaggttgctagtgttttctatttttctatttttagaccagttcttgaaatatc------agt 340  Q
    |||||||||||||| || || ||||| ||| |||||||||||||| |||||||||||||||||  ||        |||||||||||||||       |||    
T  32763168 tttatctcaaattcatcagtgtttca-atgtcaaaactaaggttgttagtgttttctatttttggat--------cagttcttgaaatatatatatgagt 32763258  T
Q  341 ctcaaattttcttttattgatctaatgtcaattgtggtgcagatgcaaatcttcgta 397  Q
    ||||||||||| ||||||||| |||||  | ||||||||||||||||||||| ||||    
T  32763259 ctcaaattttcctttattgatttaatggtatttgtggtgcagatgcaaatctacgta 32763315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 25469530 - 25469645
Alignment:
Q  23 ctgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaacctctca 122  Q
    |||||||| ||| ||||||  | ||||||||||| |||||||||   |||||||||| || |||||||| ||||||||  ||||| |||  ||||||||     
T  25469530 ctgaaatttcacacttttgcgaagaatgtccaacgggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcg 25469629  T
Q  123 agctagaaatttgcat 138  Q
    || |||||||||||||    
T  25469630 agatagaaatttgcat 25469645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 32557798 - 32557680
Alignment:
Q  237 actctagcaatttatctcaaattcttcggtttttcacatgccaaaactaaggttgctagtgttttctatttttctatttttagaccagttcttgaaatat 336  Q
    ||||||||| |||||||||||||| || |||||||| |||||||||  | | ||| ||||||||||  |||||| | |||| || ||||||| |||||||    
T  32557798 actctagcattttatctcaaattcatcagtttttcaaatgccaaaa--aggattgttagtgttttccgtttttc-aattttggatcagttctggaaatat 32557702  T
Q  337 cagtctcaaattttcttttatt 358  Q
    ||   | |||||||||||||||    
T  32557701 caaaattaaattttcttttatt 32557680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 32740317 - 32740410
Alignment:
Q  296 tgttttctatttttctatttttagaccagttcttgaaatatcagtctcaaattttcttttattgatctaatgtcaattgtggtgcagatgcaaat 390  Q
    ||||||||||||||||||| || || || ||| | |||||||||||| ||||||| || ||| | | || || ||||||||||||||||||||||    
T  32740317 tgttttctatttttctattgtt-gatcaattccttaaatatcagtctaaaattttgttgtatcgttttattggcaattgtggtgcagatgcaaat 32740410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 7970044 - 7969919
Alignment:
Q  16 atgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaa 115  Q
    |||||||||||||||||| |||||||  | ||| ||||||||| ||||||||| |||||||||| ||||||||||| ||||||||  | |||||||  ||    
T  7970044 atgcaaactgaaattacagtcttttgcgaagaacgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaa 7969945  T
Q  116 cctctcaagctagaaatttgcataac 141  Q
    |||||||||||||| |||||||||||    
T  7969944 cctctcaagctagacatttgcataac 7969919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 37577067 - 37577190
Alignment:
Q  16 atgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaa 115  Q
    |||||||| |||||| || || ||||  | |||||| |||| | ||||||||  ||||||||||  |||||||||| ||||||||  |||||||||  ||    
T  37577067 atgcaaaccgaaatttcagtcgtttgcgaagaatgtgcaacggtttactttatcaactctttcattagagttccttgtgattccatttggttcttctgaa 37577166  T
Q  116 cctctcaagctagaaatttgcata 139  Q
    |||||| |||||||||||||||||    
T  37577167 cctctcgagctagaaatttgcata 37577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 361
Target Start/End: Original strand, 37577275 - 37577403
Alignment:
Q  237 actctagcaatttatctcaaattcttcggtttttcacatgccaaaactaaggttgctagtgttttctatttttctatttttagaccagttcttgaaatat 336  Q
    ||||||||| || ||||||||||| || |||||||| |||||||||  |||  |  || ||||||||| |||||||||||| ||  ||||||||||||||    
T  37577275 actctagcatttaatctcaaattcatcagtttttcaaatgccaaaaa-aagaatattactgttttctaattttctatttttggattagttcttgaaatat 37577373  T
Q  337 cagt-----ctcaaattttcttttattgat 361  Q
    ||||     |||||||||||||||||||||    
T  37577374 cagtctcaactcaaattttcttttattgat 37577403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 361
Target Start/End: Complemental strand, 7969818 - 7969711
Alignment:
Q  246 atttatctcaaattcttcggtttttcacatgccaaaactaaggttgctagtgttttctatttttctatttttagaccagttcttgaaatatcagtctcaa 345  Q
    ||||||||||||||| || ||||| || |||||||||  ||||||||||||||| |||||       |||||  | |||||||||||||||  |||||||    
T  7969818 atttatctcaaattcatcagttttgcaaatgccaaaaa-aaggttgctagtgttctctat-------tttttgtatcagttcttgaaatatttgtctcaa 7969727  T
Q  346 attttcttttattgat 361  Q
    | ||||||||||||||    
T  7969726 aatttcttttattgat 7969711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 17583451 - 17583573
Alignment:
Q  19 caaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaacct 118  Q
    ||||||||||||||| ||||| || | ||| |||||||||||| |||||| |||||||||| ||||||| ||| ||||||||  |||||||||  |||||    
T  17583451 caaactgaaattacagtctttcgtgaagaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacct 17583550  T
Q  119 ctcaagctagaaatttgcataac 141  Q
    ||||||||||| |||||||||||    
T  17583551 ctcaagctagatatttgcataac 17583573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 17591356 - 17591480
Alignment:
Q  17 tgcaaactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaac 116  Q
    |||| |||||||||||| |||||||  | ||| |||||||| |||||||||| |||||||||| ||||||| ||| ||||||||  |||||||||  |||    
T  17591356 tgcatactgaaattacagtcttttgcgaagaacgtccaacaagttactttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaac 17591455  T
Q  117 ctctcaagctagaaatttgcataac 141  Q
    ||||||||||||| |||||||||||    
T  17591456 ctctcaagctagatatttgcataac 17591480  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 17583721 - 17583806
Alignment:
Q  306 ttttctatttttagaccagttcttgaaatatcagtctcaaattttcttttattgatctaatgtcaattgtggtgcagatgcaaatct 392  Q
    |||||||||||| || ||||||||||||||||| |||||| ||||| || |||||| ||||| ||||| | ||||||||||||||||    
T  17583721 ttttctatttttggatcagttcttgaaatatcaatctcaagttttc-ttcattgatttaatggcaatttttgtgcagatgcaaatct 17583806  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 17591629 - 17591684
Alignment:
Q  306 ttttctatttttagaccagttcttgaaatatcagtctcaaattttcttttattgat 361  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||    
T  17591629 ttttctatttttggatcagttcttgaaatatcaatctcaaattttctattattgat 17591684  T

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