View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3042_low_9 (Length: 379)
Name: NF3042_low_9
Description: NF3042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3042_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 6093383 - 6093746
Alignment:
| Q |
1 |
aatattccaacttattcatcccttgaacatcttcgacggtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093383 |
aatattccaacttattcatcccttgaacatcttcaacagtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
6093482 |
T |
|
| Q |
101 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093483 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
6093582 |
T |
|
| Q |
201 |
aatgtaatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctca |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6093583 |
aatgtaatgaccaatcttgacaatgcttgtagctctcccaacgggggaattttttttagtgtattacatcctgttagtaacaaagaaataagagacctca |
6093682 |
T |
|
| Q |
301 |
acttagtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatac |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6093683 |
acttagtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatac |
6093746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 6179676 - 6179797
Alignment:
| Q |
126 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
225 |
Q |
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||||| || |||||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||| | ||||| ||||| |||||||||||||| |
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| T |
6179676 |
ttgttgctagatagatcaagccatttcaaattggttagtttttccaagccttgtggtgcttcctcaatggaagtaaatgaaatgatcaatcttgacaatg |
6179775 |
T |
|
| Q |
226 |
cttgtagctctcccaatggggg |
247 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
6179776 |
cttgtagttctcccaatggggg |
6179797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 363
Target Start/End: Original strand, 6246509 - 6246746
Alignment:
| Q |
126 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
225 |
Q |
| |
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||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||| | || |||||||||||||||||||| |
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| T |
6246509 |
ttgttgctagatagatcaagccatttcaaattgattagtttttccaatccttgtggtgcttcctcaatggaagtttttgaaatgaccaatcttgacaatg |
6246608 |
T |
|
| Q |
226 |
cttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaaga |
325 |
Q |
| |
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||||||| ||||||||||| |||| | || || ||| | | | || || |||| ||||||||||||||| | | ||| ||| |||||||| || |
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|
| T |
6246609 |
cttgtagttctcccaatggtggaacatgtttcaatgaataacaacttttgagcactaaagtaataagagacctcaattcactcacagagtttggcaatga |
6246708 |
T |
|
| Q |
326 |
ttcaagttttctattacaggatagatctagtattgata |
363 |
Q |
| |
|
||| || || ||||| |||||| |||||||||||||| |
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|
| T |
6246709 |
ttctagccttttattataggatatatctagtattgata |
6246746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 360
Target Start/End: Original strand, 6088141 - 6088363
Alignment:
| Q |
135 |
gatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatgcttgtagct |
234 |
Q |
| |
|
|||||||||||||||||||| | ||| || ||||| ||||||||| |||| | ||||| ||| || |||||||||||||||||||| ||| | |
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|
| T |
6088141 |
gatagatcaagccatttcaaatg---tagtttatccaagccttgtggtgcttctttaatggaacagtctgaaatgaccaatcttgacaatgaccatagtt |
6088237 |
T |
|
| Q |
235 |
ctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaagattcaagttt |
334 |
Q |
| |
|
|||||| |||||| | |||| || ||||||||||||||| ||||||| |||||| |||||||||| ||||| || ||||||||||| ||||| |
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| T |
6088238 |
ctcccactgggggcacatgtgtaagtgaatgacatcctgttagtactaaagaaacaagagatatcaacttagtgatagagttaggcaaagattctagttt |
6088337 |
T |
|
| Q |
335 |
tctattacaggatagatctagtattg |
360 |
Q |
| |
|
| ||||| ||||||||| ||||||| |
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|
| T |
6088338 |
tttattattggatagatcgagtattg |
6088363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 328
Target Start/End: Original strand, 6105291 - 6105484
Alignment:
| Q |
135 |
gatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatgcttgtagct |
234 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||||||| ||| |||||| || |||||||| | | | |||||||||||||||||||||||||| | |
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|
| T |
6105291 |
gatagatcaagccatttcaaattggttagtttttccaagcctagtggtaatttctcaatggaagtcaccgaaatgaccaatcttgacaatgcttgtaatt |
6105390 |
T |
|
| Q |
235 |
ctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaagattc |
328 |
Q |
| |
|
||||||||||||| | |||| | ||||| | | || || ||||||| |||||||||||||||||| || || | |||||||||||| |
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|
| T |
6105391 |
ctcccaatgggggcacatgtatcagtgaagcacatcttttgagaactaaagaaacaagagacctcaacttagtgatggagtctggcaaagattc |
6105484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 6207306 - 6207428
Alignment:
| Q |
206 |
aatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaactta |
305 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| | |||| || ||||||| |||||| ||||||| |||||||||||||||| |
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| T |
6207306 |
aatgaccaatcttgacaatctctgtaattctcccaatgggggcacatgtttcagtgaatcacatccttttagtattaaagaaacaagagacctcaactta |
6207405 |
T |
|
| Q |
306 |
gtcatagaatttggcaaagattc |
328 |
Q |
| |
|
|| || || | |||||||||||| |
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|
| T |
6207406 |
gtgatggagtctggcaaagattc |
6207428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 6233724 - 6233846
Alignment:
| Q |
206 |
aatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaactta |
305 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| | |||| || ||||||| |||||| ||||||| |||||||||||||||| |
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|
| T |
6233724 |
aatgaccaatcttgacaatctctgtaattctcccaatgggggcacatgtttcagtgaatcacatccttttagtattaaagaaacaagagacctcaactta |
6233823 |
T |
|
| Q |
306 |
gtcatagaatttggcaaagattc |
328 |
Q |
| |
|
|| || || | |||||||||||| |
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|
| T |
6233824 |
gtgatggagtctggcaaagattc |
6233846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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