View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3044_high_1 (Length: 689)
Name: NF3044_high_1
Description: NF3044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3044_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 53 - 536
Target Start/End: Complemental strand, 1986924 - 1986440
Alignment:
| Q |
53 |
tcatacacctatagtaaatataaatttctgttaagatgatgagattacttgattaactaccacaaagaagttttcgcattataaacatttattttgttga |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1986924 |
tcatacacctatagtaaatataaatttctgttaagatga---gattactttattaactaccacaaagaagttttcgcattataaacatttattttgttga |
1986828 |
T |
|
| Q |
153 |
annnnnnngtttaataatgaccaatctatgttggtgaattagcgggacacaaaaggtgtgttctcctcttccggtc-aannnnnnnnnatatgtaagagt |
251 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
1986827 |
atttttttgtttaataatgaccaatctatgttggtgaattagcaggatacaaaaggtgtgttctcctcttccagtcgaatttttttttatatgtaagagt |
1986728 |
T |
|
| Q |
252 |
tagagatcaaatttatgattatttgtttaagtggtccaaattccttgcgatttaagttattttat--tgttggtattttgtgaggtt-attaattctatg |
348 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | | |||||||| |
|
|
| T |
1986727 |
tagagattaaatttatgattatttgtttaagtggtccaaattccttgcgatttaagtcattttatattgttggtattttgtgaggtttaatgattctatg |
1986628 |
T |
|
| Q |
349 |
attttgaagttgagcattcgatgtctttgaaagagctgattcatcggataatgtctttgaaacctttgctgatgaatgaactagatgcaccaatgcattt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1986627 |
attttgaagttgagcattcgatgtctttgaaagagctgattcatcggataatgtctttgaaaccttggctgatgaatgaactagatgcaccaatgcattt |
1986528 |
T |
|
| Q |
449 |
agctgcattaatatgttaaggttcgannnnnnnncaaaagagagcacaaaacttgtcccattacaaggaaactgaggtatagtgtcag |
536 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1986527 |
agctgcattaatatgttaaggttcgattttttttcaaaagagagcacaaaacttgtcccattacaaggaaactgaggtatagtgtcag |
1986440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 571 - 675
Target Start/End: Complemental strand, 1986405 - 1986301
Alignment:
| Q |
571 |
gcttcactttttcatgcacacacataacaccacatgttctgaaaaggtcgacacgaatgtactttctgccgaattgttgccatgtgcacctttctttttc |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1986405 |
gcttcactttttcatgcacacacataacaccacatgttctgaaaaggtcgacacgaatgtactttctgccgaattgttgccatgtgcacctttctttttc |
1986306 |
T |
|
| Q |
671 |
atttc |
675 |
Q |
| |
|
||||| |
|
|
| T |
1986305 |
atttc |
1986301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University