View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3044_high_5 (Length: 465)
Name: NF3044_high_5
Description: NF3044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3044_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 40749467 - 40749895
Alignment:
| Q |
19 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacnnnnnnnnn-agtatcaaaaaatttaggtgactttggtt |
117 |
Q |
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| T |
40749467 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacttttttttttagtataaaaaaatttaggtgactttggtt |
40749566 |
T |
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| Q |
118 |
tcaaagaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttattgtttttgatgtggatg |
217 |
Q |
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| T |
40749567 |
tcaaagaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttcttgtttttgatgtggatg |
40749666 |
T |
|
| Q |
218 |
aaaaaactgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgat |
317 |
Q |
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| T |
40749667 |
aaaaaactgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgat |
40749766 |
T |
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| Q |
318 |
ctagtactactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggatagctttattacacacagagctttctgcgacgcatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40749767 |
ctagtactactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggatagctttattacacacagagctttctgcgacgcatt |
40749866 |
T |
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| Q |
418 |
agccgtagaaagtgcaagacactcatctc |
446 |
Q |
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| T |
40749867 |
agccgtagaaagtgcaagacactcatctc |
40749895 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 31644111 - 31644073
Alignment:
| Q |
15 |
aacctgtggtactagagaatataagtgtgattgtggtac |
53 |
Q |
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| T |
31644111 |
aacctgtggtactcgagaatataaatgtgattgtggtac |
31644073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 42287194 - 42287244
Alignment:
| Q |
19 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaa |
69 |
Q |
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| T |
42287194 |
tgtggtactagagaatatagatgtgattgtggcaccctcttctctaggtaa |
42287244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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