View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3044_high_8 (Length: 283)

Name: NF3044_high_8
Description: NF3044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3044_high_8
NF3044_high_8
[»] chr3 (10 HSPs)
chr3 (1-249)||(48402435-48402683)
chr3 (164-248)||(48394383-48394467)
chr3 (175-248)||(39623993-39624066)
chr3 (175-248)||(39918624-39918697)
chr3 (175-248)||(41665431-41665504)
chr3 (184-248)||(52044108-52044172)
chr3 (175-242)||(31604695-31604762)
chr3 (184-242)||(27481714-27481772)
chr3 (175-248)||(47667108-47667181)
chr3 (192-236)||(48413996-48414040)
[»] chr1 (9 HSPs)
chr1 (169-249)||(5757791-5757871)
chr1 (169-249)||(6073241-6073321)
chr1 (184-248)||(3820306-3820370)
chr1 (175-242)||(5031736-5031803)
chr1 (175-242)||(17983258-17983325)
chr1 (175-242)||(20607548-20607615)
chr1 (175-242)||(20610819-20610886)
chr1 (184-230)||(41985258-41985304)
chr1 (184-242)||(41987975-41988033)
[»] chr7 (7 HSPs)
chr7 (175-242)||(31516559-31516626)
chr7 (175-248)||(23260674-23260747)
chr7 (184-249)||(38538917-38538982)
chr7 (184-248)||(39796752-39796816)
chr7 (175-242)||(28040460-28040527)
chr7 (175-242)||(33171122-33171189)
chr7 (175-242)||(44206096-44206163)
[»] chr8 (6 HSPs)
chr8 (175-248)||(9944023-9944096)
chr8 (184-248)||(18364540-18364604)
chr8 (184-248)||(27547181-27547245)
chr8 (184-248)||(35929253-35929317)
chr8 (175-242)||(43731590-43731657)
chr8 (175-242)||(43748336-43748403)
[»] chr5 (4 HSPs)
chr5 (175-236)||(20200386-20200447)
chr5 (184-248)||(8880751-8880815)
chr5 (184-242)||(32684991-32685049)
chr5 (175-242)||(20190352-20190419)
[»] chr4 (1 HSPs)
chr4 (170-249)||(24267486-24267565)
[»] chr2 (4 HSPs)
chr2 (175-242)||(27282669-27282736)
chr2 (184-242)||(36047056-36047114)
chr2 (184-242)||(36048287-36048345)
chr2 (184-242)||(44206827-44206885)
[»] scaffold0012 (1 HSPs)
scaffold0012 (175-230)||(184931-184986)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 48402683 - 48402435
Alignment:
Q  1 tctaccataacgatctgcgtctgtagttgctgcatttatttatttatttttggttnnnnnnnngaggccttgtagttgctgcattttaaactatatcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| ||||| | |        |||||||||||||||||||||| ||||||||||||||    
T  48402683 tctaccataacgatctgcgtctgtagttgctgcatttattatttttttttttggtacaaaagagaggccttgtagttgctgcattctaaactatatcttc 48402584  T
Q  101 atcaatctaatgcaattgttttatagaaagatttacatgttatttagtaaacttcagaggggtaattagcaaataagttgttctagtatagtggtaagta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  48402583 atcaatctaatgcaattgttttatagaaagatttacatgttatttagtaaacttcagaggggtaatcagcaaataagttgttgtagtatagtggtaagta 48402484  T
Q  201 tttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcga 249  Q
    || ||| |||||| |||||||||| | |||||||||  ||||| |||||    
T  48402483 ttcccgtctgtcacgcgggtgacctgagtttgatccctggcaacggcga 48402435  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 48394467 - 48394383
Alignment:
Q  164 aattagcaaataagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||| ||||| ||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  48394467 aattatcaaatgagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 48394383  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 39624066 - 39623993
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  39624066 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 39623993  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 39918697 - 39918624
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    |||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||| ||||| |||||| ||||    
T  39918697 aagttgttgtagtatagtggtaagtattcccgcctgtcacacgggtgacccgggttcgatccccggcaacggcg 39918624  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 41665504 - 41665431
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  41665504 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 41665431  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 52044108 - 52044172
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  52044108 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 52044172  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 31604695 - 31604762
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  31604695 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 31604762  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 27481772 - 27481714
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||| ||||| |||||    
T  27481772 tagtatagtggtaagtattcccgcctgtcacgcgggtgatccgggttcgatccccggca 27481714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 47667181 - 47667108
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    |||| ||| ||||||||||||||||||| |||||||||| ||  |||||||||||| ||||| |||||| ||||    
T  47667181 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcaagtgacccgggttcgatccccggcaacggcg 47667108  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 48414040 - 48413996
Alignment:
Q  192 tggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcc 236  Q
    ||||||||||| |||| ||||| ||||||||| ||||||||||||    
T  48414040 tggtaagtattcccgcttgtcacgcgggtgactcgggtttgatcc 48413996  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 5757791 - 5757871
Alignment:
Q  169 gcaaataagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcga 249  Q
    |||||| ||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| |||||    
T  5757791 gcaaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcga 5757871  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 6073321 - 6073241
Alignment:
Q  169 gcaaataagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcga 249  Q
    |||||| ||||||| ||||||||||||||||||| || ||||||| |||||||||||||||| ||||| |||||| |||||    
T  6073321 gcaaattagttgttgtagtatagtggtaagtattcccacctgtcacgcgggtgacccgggttcgatccccggcaacggcga 6073241  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 3820370 - 3820306
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  3820370 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 3820306  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 5031736 - 5031803
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  5031736 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 5031803  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 17983258 - 17983325
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  17983258 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 17983325  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 20607548 - 20607615
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  20607548 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 20607615  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 20610819 - 20610886
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||||||| ||||||||||||||||||| |||| |||||  ||||||||||||||| ||||| |||||    
T  20610819 aagttgttgtagtatagtggtaagtattcccgcttgtcacccgggtgacccgggttcgatccccggca 20610886  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 41985258 - 41985304
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtt 230  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  41985258 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggtt 41985304  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 41987975 - 41988033
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    ||||||||||||||||||| ||||||||||  |||||||||| |||||||||| |||||    
T  41987975 tagtatagtggtaagtattcccgcctgtcacccgggtgacccaggtttgatccccggca 41988033  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 31516559 - 31516626
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||    
T  31516559 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcctcggca 31516626  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 23260674 - 23260747
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  23260674 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 23260747  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 38538917 - 38538982
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcga 249  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| |||||    
T  38538917 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcga 38538982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 39796816 - 39796752
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  39796816 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 39796752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 28040527 - 28040460
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  28040527 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 28040460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 33171122 - 33171189
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  33171122 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 33171189  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 44206096 - 44206163
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  44206096 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 44206163  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 9944096 - 9944023
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  9944096 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 9944023  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 18364540 - 18364604
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  18364540 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 18364604  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 27547181 - 27547245
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  27547181 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 27547245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 35929253 - 35929317
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  35929253 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 35929317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 43731657 - 43731590
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  43731657 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 43731590  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 43748403 - 43748336
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  43748403 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 43748336  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 20200447 - 20200386
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcc 236  Q
    |||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  20200447 aagtcgttgtagtatagtggtaagtattcctgcctgtcatgcgggtgacccgggtttgatcc 20200386  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 8880751 - 8880815
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcg 248  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| ||||    
T  8880751 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 8880815  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 32684991 - 32685049
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  32684991 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 32685049  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 20190419 - 20190352
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| | |||||||||||||| ||||| |||||    
T  20190419 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgtgggtgacccgggttcgatccccggca 20190352  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 24267565 - 24267486
Alignment:
Q  170 caaataagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggcaatggcga 249  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||| ||||  |||||||||| ||||| |||||| |||||    
T  24267565 caaatgagtcgttgtagtatagtggtaagtatttccgcctgtcacgcggacgacccgggttcgatccccggcaacggcga 24267486  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 27282736 - 27282669
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  27282736 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 27282669  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 36047056 - 36047114
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  36047056 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 36047114  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 36048287 - 36048345
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  36048287 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 36048345  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 44206827 - 44206885
Alignment:
Q  184 tagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtttgatcctcggca 242  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| || ||||| |||||    
T  44206827 tagtatagtggtaagtattcccgcctgtcacgcgggtgacccggattcgatccccggca 44206885  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 184931 - 184986
Alignment:
Q  175 aagttgttctagtatagtggtaagtatttccgcctgtcatgcgggtgacccgggtt 230  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||| |||||||    
T  184931 aagttgttgtagtatagtggtaagtatttccatctgtcatgcgggtgatccgggtt 184986  T

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