View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3044_low_3 (Length: 647)
Name: NF3044_low_3
Description: NF3044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3044_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 40855698 - 40855329
Alignment:
| Q |
1 |
agtgtggccacacatacaaactaaaaatttcaaattattattacttggacacacattcaatagcattacgtcagaatggaaaaggttaaaaagccccata |
100 |
Q |
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| T |
40855698 |
agtgtggccacacgtacaaactaaaaatttcaaattattattacttggacacacattcaatagcattatgtcagaatggaaaaggttaaaaagccccata |
40855599 |
T |
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| Q |
101 |
tttgggattaagaatgtgaccaactattgcctgtcatcacttgctagtactactgaactgatagaaataaaggcagtgaacttgttaatatcatcctcca |
200 |
Q |
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| T |
40855598 |
tttgggattaagaatgtgaccaactaatgcctgtcatcacttgctagtactactgaactgatagaaataaaggcagtgaacttgttaatatcatcctcca |
40855499 |
T |
|
| Q |
201 |
atatgatttcttcaacatagggctggaaattgctttggaaggccatcacatcagatagccaaagggaaccgaagttgtataggctagtcttttaatttta |
300 |
Q |
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| T |
40855498 |
atatgatttcttcaacatagggctggaaattgctttggaaggccatcacatcagatagccaaagggaaccgaagttgtataggctagtcttttaatttta |
40855399 |
T |
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| Q |
301 |
actaccttatcaacatatgagtggatcaagctttcaatgtcttgaacaatactttctggttgtccctctg |
370 |
Q |
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| T |
40855398 |
actaccttatcaacatatgagtggatcaagctttcaatgtcttgaacaatactttctggttgtccctctg |
40855329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 437 - 647
Target Start/End: Complemental strand, 40855262 - 40855052
Alignment:
| Q |
437 |
gattatttgtgaaaagataatgaaaagaaagtgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaagttgacaactatcaacaaata |
536 |
Q |
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| T |
40855262 |
gattatttgtgaaaagataatgaaaataaagcgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaagttgacaactatcaacaaata |
40855163 |
T |
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| Q |
537 |
taaaaatagttagaacaacaacaacaacattaattagatgcagactgtaatcattacaccacaggtagggggaagatcacacatatacaataatattaga |
636 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855162 |
taaaaatagttagaacaacaacaacaacattaattagatacggactgtaatcattacaccacaggtagggggaagatcacacatatacaataatattaga |
40855063 |
T |
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| Q |
637 |
ggatgtacaac |
647 |
Q |
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| T |
40855062 |
ggatgtacaac |
40855052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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