View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3045_high_3 (Length: 453)
Name: NF3045_high_3
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 47293457 - 47293620
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47293457 |
agacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
47293556 |
T |
|
| Q |
119 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
47293557 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcgctcaa |
47293620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 55705882 - 55706048
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
118 |
Q |
| |
|
||||||||||||||||||||| || || ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
55705882 |
agacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctatt |
55705981 |
T |
|
| Q |
119 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaagat |
185 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
55705982 |
gctattacaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagat |
55706048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 45876880 - 45876736
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
118 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
45876880 |
agacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctatt |
45876781 |
T |
|
| Q |
119 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggtt |
163 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
45876780 |
gctatagcaaaattgaaagctaatatacctcaagacagacaggtt |
45876736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 45858949 - 45858817
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
118 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| || |||||| |
|
|
| T |
45858949 |
agacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctatt |
45858850 |
T |
|
| Q |
119 |
gctatagcaaaattgaaggccaatatacctcaa |
151 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
45858849 |
gctatagccaaattgaaggccaatatacctcaa |
45858817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 56208670 - 56208510
Alignment:
| Q |
24 |
agatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattgctat |
123 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||||| || ||| |||||| |||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
56208670 |
agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat |
56208571 |
T |
|
| Q |
124 |
agcaaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaaga |
184 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||| |||||| ||||||| |||||||| |
|
|
| T |
56208570 |
agcaaaattgaaggctggtatacctcaagacaaacatgttactgttgtggacatctcaaga |
56208510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 54304257 - 54304388
Alignment:
| Q |
51 |
tttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattgctatagcaaaattgaaggccaatatacctca |
150 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||||||||||||||| || | || || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54304257 |
tttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctca |
54304356 |
T |
|
| Q |
151 |
aaacagacaggttactcttgtggagctctcaa |
182 |
Q |
| |
|
||| || ||||||||||||| || ||||||| |
|
|
| T |
54304357 |
aaatagtgaggttactcttgttgaactctcaa |
54304388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 35854543 - 35854688
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
118 |
Q |
| |
|
|||||||||| || |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
35854543 |
agacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctatt |
35854642 |
T |
|
| Q |
119 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggtta |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35854643 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggtta |
35854688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 10521303 - 10521496
Alignment:
| Q |
20 |
gacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattg |
119 |
Q |
| |
|
||||||||| ||||| || |||| | |||||||||| ||| |||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
10521303 |
gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg |
10521402 |
T |
|
| Q |
120 |
ctatagcaaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaagatatggtcctactctacgcatgctcttaag |
213 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||| |||||| |||||||||| || ||||| |
|
|
| T |
10521403 |
ctatcgcaaaattcaaggccaatatacctcaaaacaaacaggttaatcttgtcgagctctcaagatccggtccttctctacgcatacttttaag |
10521496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 35802579 - 35802504
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgct |
94 |
Q |
| |
|
|||||||||| || |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35802579 |
agacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct |
35802504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 7972220 - 7972058
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
118 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||| |||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
7972220 |
agacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgctatt |
7972121 |
T |
|
| Q |
119 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctca |
181 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
7972120 |
gctatagcaaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctca |
7972058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 7961850 - 7961689
Alignment:
| Q |
19 |
agacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctatt |
118 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||| ||||| || ||| ||||| ||| |||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
7961850 |
agacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctatt |
7961751 |
T |
|
| Q |
119 |
gctatagcaaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctc |
180 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||| |||| |
|
|
| T |
7961750 |
gctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctc |
7961689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 24357457 - 24357601
Alignment:
| Q |
20 |
gacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattg |
119 |
Q |
| |
|
||||||||||| |||| |||||||| || ||||||| ||||| || |||| ||| |||||||||||||||||||||||||| || || || ||||||| |
|
|
| T |
24357457 |
gacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattg |
24357556 |
T |
|
| Q |
120 |
ctatagcaaaattgaaggccaatatacctcaaaacagacaggtta |
164 |
Q |
| |
|
| |||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
24357557 |
ccatagcaaaattgaaggccaatatacctcaagacgaacaggtta |
24357601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University