View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3045_high_4 (Length: 419)
Name: NF3045_high_4
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 30677990 - 30678382
Alignment:
| Q |
18 |
gtgatgcatctcc-aagtttcccccataactcagaacattctctaataaatgatttcaatcctttgttttccaaccaacaaccgttgactctaaaggttt |
116 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30677990 |
gtgatgcatctcccaagtttccctcataactcagaacattctctaataaatggtttcaatcccttgttttccaaccaacaaccgttgactctaaagattt |
30678089 |
T |
|
| Q |
117 |
agggccctaattgttgttgagggcggagaacatcgcaatgcttgtggacaattatcctcctccatannnnnnnnnnnnngccctcccatcgaccgcgtac |
216 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
30678090 |
agggccctaattgttgttgggggcggagaacatcgcaatgcttgtggacaattatcctcctgcatatttttttatttttgccctcccatcgaccgcgtac |
30678189 |
T |
|
| Q |
217 |
tccaatgactacatagaatctattctaaaccggccaaaaggccaatcatattacgacaagtggacaaaacacttcagaccaaggacgcggtgtcttgcgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30678190 |
tccaatgactacatagaatctattctgaaccggccaaaaggccaatcctattacgacacgtggacaaaacacttcagaccaaggacgcggtgtcttgcgt |
30678289 |
T |
|
| Q |
317 |
gagcacatcaagaatagtgaacaccacctcactgtatcatgttcccgcgcttcctacaccgtacacgtggcctccaacggctgcctgatgatg |
409 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30678290 |
gagcacatcaataatagtgaacaccacctcactgtagcatgttcccgcgcttcctacaccatacacgtggcctccaacggctgcctgatgatg |
30678382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 407
Target Start/End: Complemental strand, 33189659 - 33189628
Alignment:
| Q |
376 |
cgtacacgtggcctccaacggctgcctgatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
33189659 |
cgtacacgtggcctccaacggctgcctgatga |
33189628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University