View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3045_high_5 (Length: 305)
Name: NF3045_high_5
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 43021163 - 43021431
Alignment:
| Q |
22 |
agggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaat |
121 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021163 |
agggggcatatatggccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaat |
43021262 |
T |
|
| Q |
122 |
ggtagtagtgctgaaacgaatataacatataaacataatttggctcctatccaccttttttagattcttccacaagggccccaactttgtgtgtctgctt |
221 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021263 |
ggtagtagtgcagaaacgaatataacatataaacataatatggctcctatccaccttttttagattcttccacaagggccccaactttgtgtgtctgctt |
43021362 |
T |
|
| Q |
222 |
ctattttacagaccccactctggatttcatttgtttaatttcattaattgattacactttaacttggat |
290 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021363 |
ctatttttcagaccccactctgcatttcatttgtttaatttcattaattgattacactttaacttggat |
43021431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 13675769 - 13675644
Alignment:
| Q |
22 |
agggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaat |
121 |
Q |
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||||||||||||||| ||||||||||||| | |||||| |||||||||| |||||||||||||||| | || ||||||||| ||||| ||||||||||| |
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| T |
13675769 |
agggggcatatatagatagagatagcatttgtgctagcatttttatatggtttcttggtatgccagaaaattagtcccataatgaagttgcaggaggaat |
13675670 |
T |
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| Q |
122 |
ggtagtagtgctgaaacgaatataac |
147 |
Q |
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||||||| ||| |||||||||||||| |
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| T |
13675669 |
ggtagtaatgcagaaacgaatataac |
13675644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 19964950 - 19965075
Alignment:
| Q |
22 |
agggggcatatatagccagagatagcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaat |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||| | |||||| |||||||||| |||||||||| ||| | | |||||||||||| ||||| ||||||||||| |
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| T |
19964950 |
agggggcatatatagatagagatagcatttgtgctagcatttttatatggtttcttggtatcccaaaaaattggtcccataatgaagttgcaggaggaat |
19965049 |
T |
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| Q |
122 |
ggtagtagtgctgaaacgaatataac |
147 |
Q |
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||||||| ||| |||||||||||||| |
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| T |
19965050 |
ggtagtaatgcagaaacgaatataac |
19965075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 50805724 - 50805826
Alignment:
| Q |
45 |
agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaatggtagtagtgctgaaacgaatat |
144 |
Q |
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||||||| | |||||| |||||||||| |||||||||||| ||| | |||||||||||| ||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
50805724 |
agcatttgtgctagcatttttatatggtttcttggtatgctagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
50805823 |
T |
|
| Q |
145 |
aac |
147 |
Q |
| |
|
||| |
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|
| T |
50805824 |
aac |
50805826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 50870153 - 50870051
Alignment:
| Q |
45 |
agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaatggtagtagtgctgaaacgaatat |
144 |
Q |
| |
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||||||| | |||||| |||||||||| |||||||||| | | | | || ||||||||| ||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
50870153 |
agcatttgtgctagcatttttatatggtttcttggtatacaaaaaaattagtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat |
50870054 |
T |
|
| Q |
145 |
aac |
147 |
Q |
| |
|
||| |
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|
| T |
50870053 |
aac |
50870051 |
T |
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