View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3045_low_1 (Length: 807)
Name: NF3045_low_1
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 1 - 796
Target Start/End: Original strand, 54473827 - 54474618
Alignment:
| Q |
1 |
gttaagcccgaaaaactcaccttatcattaataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagacatcaagggtgcaaacat |
100 |
Q |
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| T |
54473827 |
gttaagcccgaaaaactaacattatcattaataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagacatcaagggtgcaaacat |
54473926 |
T |
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| Q |
101 |
tctaattgcaaacaactttgcagccaaagtacgtataatgatcatttactatatgtttagttattaaagaattgtaattatcaagtgattctacccattt |
200 |
Q |
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| T |
54473927 |
tctaattgaaaacaactttgaagccaaagtacgtataatgatcatttactatatgtttagttattaaagaattgtaattatcaagtgattctatccattt |
54474026 |
T |
|
| Q |
201 |
aggtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaattaaccaataataattc |
300 |
Q |
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| T |
54474027 |
aggtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaattaa---ataataattc |
54474123 |
T |
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| Q |
301 |
aacccaaactatatacatttatttatgtatgaatcttttgcaaattccaaataatttctacctacttgtatatggctatcaattcaggtatatggctcct |
400 |
Q |
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| T |
54474124 |
aacccaaactatatacatttatttatgtatgaatcttttgcaaattccaaataatttctacctacttgtatatggctatcaattcaggtatatggctcct |
54474223 |
T |
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| Q |
401 |
gagtatgcatcaagtggtaagctaactgataaatctgatgtcttttcgtatggtgtcatgcttttggagctcataacaggacgacgaccagtcggtaccg |
500 |
Q |
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| T |
54474224 |
gagtatgcatcaagtggtaagctaactgataaatctgatgtcttctcgtatggtgttatgcttttggagctcataacaggacgacggccagtcggtaccg |
54474323 |
T |
|
| Q |
501 |
ccggcagtgattacgaggaagatagtttggttgattgggtatatattgcatttcatatttcgacattattttgattatgaatatttccaatactagatta |
600 |
Q |
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| T |
54474324 |
ccggcagtgattacgaggaagatagtttagttgattgggtatatattgcatttcatatttcgacattattttgattatgaatatttccaatactagatta |
54474423 |
T |
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| Q |
601 |
tcattaatgtcatattcctataattacgtaccatactttgtttatgaaaatgcaggctagaccactttgttcaaaagcactggactatggaatatatctt |
700 |
Q |
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| T |
54474424 |
tca-taatgtcatattcctataattacgtaccatactttgtttatgaaaatgcaggctagaccactttgttcaaaagcactggaatatggaatatatctt |
54474522 |
T |
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| Q |
701 |
ggattggtggatccacgtttagaggaaaattatgagaaacaagatatgacacgtatggtagcttgtgcttctgcttgtgttaggcactcaggaaga |
796 |
Q |
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| T |
54474523 |
ggattggtggatccacgtttagaggaaaattatgagaaacaagatatgacacgtatggtagcttgtgcttctgcttgtgttaggcactcaggaaga |
54474618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 33145136 - 33145051
Alignment:
| Q |
200 |
taggtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaatt |
285 |
Q |
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| T |
33145136 |
taggtggctgattttggattggctaagttgactaccgatactaatacacatgtctcaactcgtgtcatgggaacattcgggtaatt |
33145051 |
T |
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