View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3045_low_2 (Length: 503)
Name: NF3045_low_2
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 489
Target Start/End: Original strand, 1043120 - 1043599
Alignment:
| Q |
10 |
attattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacactccaggaatatggac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1043120 |
attattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacacgccaggaatatggac |
1043219 |
T |
|
| Q |
110 |
taaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttggcatgttggaagagtttcaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1043220 |
taaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggcggtatatttttctgtcagatttggcatgttggaagagtttcaaat |
1043319 |
T |
|
| Q |
210 |
tcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagttggagtgagcggaaggtctaactatcagtgtcaacctcaattggct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||| | |
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| T |
1043320 |
tcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagttggagtgagctgaaggtctaaccatcaatgtcaacccaaattggtt |
1043419 |
T |
|
| Q |
310 |
aagatcatcaatttttaacatagacctagcataattttagcattacctagctcaaatataacatgatttttaagcatcaatcaaataactaaggtctacc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1043420 |
aagatcatcaatttttaacatagacctagcataattttagcattacctagctcaaatataacatgatttttaagcatcaatcaaataacttaggtctacc |
1043519 |
T |
|
| Q |
410 |
atcattgccagtaaaccgaagatgatttgggtttgaggttgttattattaagaattactatcaaggtgtaaccactttct |
489 |
Q |
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| T |
1043520 |
atcattgacagtaaaccgaagatgatttgggtttgaggttgttattattgagaattactatcaaggtgtaaccactttct |
1043599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 374
Target Start/End: Original strand, 1049214 - 1049569
Alignment:
| Q |
10 |
attattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacactccaggaatatggac |
109 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
1049214 |
attattctcagagaacctctaaaggaggccttctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatggac |
1049313 |
T |
|
| Q |
110 |
taaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttggcatgttggaagagtttcaaat |
209 |
Q |
| |
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||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||| ||||||||| |
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| T |
1049314 |
taaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaagggtttcaaat |
1049413 |
T |
|
| Q |
210 |
tcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagttggagtgagcggaaggtctaactatcagtgtcaacctcaattggct |
309 |
Q |
| |
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|||||||| | | |||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
1049414 |
tcaggtat---gtatctatttcgtcatatcattatttattatgtaaataaa------tgtgaccggaaggtctaaccatctgtgtcaacctcaattggct |
1049504 |
T |
|
| Q |
310 |
aagatcatcaatttttaacatagacctagcataattttagcattacctagctcaaatataacatg |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1049505 |
aagatcatcaatttttaacatagacctagcataattttagcattacctagctcaaatataacatg |
1049569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 1032732 - 1032913
Alignment:
| Q |
30 |
aaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacactccaggaatatggactaaagagcaagttgaggcgt |
129 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| || |||||||||||||| |||||| |||| ||||| ||||||||||||||||| || ||||||| |
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| T |
1032732 |
aaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatggactaaagagcatgtcgaggcgt |
1032831 |
T |
|
| Q |
130 |
ggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttggcatgttggaagagtttcaaattc |
211 |
Q |
| |
|
|||||||||| || ||||| ||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
1032832 |
ggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagagtttctaattc |
1032913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 1052055 - 1052236
Alignment:
| Q |
30 |
aaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacactccaggaatatggactaaagagcaagttgaggcgt |
129 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| || |||||||||||||| |||||| |||| ||||| ||||||||||||||||| || ||||||| |
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| T |
1052055 |
aaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatggactaaagagcatgtcgaggcgt |
1052154 |
T |
|
| Q |
130 |
ggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttggcatgttggaagagtttcaaattc |
211 |
Q |
| |
|
|||||||||| || ||||| ||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
1052155 |
ggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagagtttctaattc |
1052236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 1070188 - 1070378
Alignment:
| Q |
15 |
tctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacactccaggaatatggactaaag |
114 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||| |||||||| ||||| || || || |||||||||||||||||||| || || ||||||||||||| |
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| T |
1070188 |
tctcaaagagcctctaaaggtggtcttctcatagccgaagctaccggtgtctctgataccgctcaaggctatccaaacacgcctggtatatggactaaag |
1070287 |
T |
|
| Q |
115 |
agcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttggcatgttggaagagtttc |
205 |
Q |
| |
|
||||||| || || |||||||| || || ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
1070288 |
agcaagtcgatgcatggaaacccattgtggatgctgttcatgacaaaggcggtgtatttttctgtcaaatttggcatgttggaagagtttc |
1070378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 1057860 - 1058038
Alignment:
| Q |
27 |
tctaaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacactccaggaatatggactaaagagcaagttgagg |
126 |
Q |
| |
|
||||| || ||| |||||||| | |||||||| ||| | || ||||| |||||||| |||||| |||| ||||| || |||||||||||||| || |||| |
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|
| T |
1057860 |
tctaacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagacacgccaggtatttggactaaagagcacgtcgagg |
1057959 |
T |
|
| Q |
127 |
cgtggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttggcatgttggaagagtttc |
205 |
Q |
| |
|
||||||||||||| || ||||| || |||| |||||||| || || ||||||||||||||||| |||||||||||||| |
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|
| T |
1057960 |
cgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttctgtcagatttggcacgttggaagagtttc |
1058038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 1064895 - 1065086
Alignment:
| Q |
26 |
ctctaaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacactccaggaatatggactaaagagcaagttgag |
125 |
Q |
| |
|
|||||| || ||| |||||||| | |||||||| ||||| || ||||| |||||||| |||||| | || ||||| || |||||||||||||| || ||| |
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| T |
1064895 |
ctctaacggaggtcttctcataaccgaagctaccggtgtctctgacaccgctcaagggtatccagatacgccaggtatttggactaaagagcatgtcgag |
1064994 |
T |
|
| Q |
126 |
gcgtggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtat |
217 |
Q |
| |
|
|| |||||||| || || ||||| ||||||| ||||||| || | || ||||||||||||||||||||||||||||| |||||||||| |
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| T |
1064995 |
gcatggaaacccattgtggatgctgttcatgctaaaggtgctaccatcttttgtcagatttggcatgttggaagagtttctgattcaggtat |
1065086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 1045880 - 1046009
Alignment:
| Q |
88 |
caaacactccaggaatatggactaaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcagatttg |
187 |
Q |
| |
|
||||||| || || |||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||| |||||||| || ||| ||| ||| ||||| |
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|
| T |
1045880 |
caaacacacctggcatatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttg |
1045979 |
T |
|
| Q |
188 |
gcatgttggaagagtttcaaattcaggtat |
217 |
Q |
| |
|
|| |||||| || ||||| ||||| ||||| |
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|
| T |
1045980 |
gcttgttggtagggtttctaattctggtat |
1046009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 1049572 - 1049627
Alignment:
| Q |
158 |
caaaggtggtatatttttctgtcagatttggcatgttggaagagtttcaaattcag |
213 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1049572 |
caaaggcggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcag |
1049627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 1641864 - 1641731
Alignment:
| Q |
84 |
tatccaaacactccaggaatatggactaaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggtggtatatttttctgtcaga |
183 |
Q |
| |
|
||||||||||| ||||| || |||| ||||| |||||||| | |||||||| || ||||||| ||||||| ||||| |||||||| || ||||||| |
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|
| T |
1641864 |
tatccaaacacaccaggcatttggagaaaagatcaagttgaaacttggaaacccattatagatgctgttcatgccaaagaaggtatattcttttgtcaga |
1641765 |
T |
|
| Q |
184 |
tttggcatgttggaagagtttcaaattcaggtat |
217 |
Q |
| |
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||||||||| |||||| | ||| ||||||||||| |
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|
| T |
1641764 |
tttggcatggtggaagggcttctaattcaggtat |
1641731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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