View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3045_low_7 (Length: 244)
Name: NF3045_low_7
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35977700 - 35977926
Alignment:
| Q |
1 |
tcttcacaataatcttatatatgttcatgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggaga |
100 |
Q |
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| T |
35977700 |
tcttcacaataatcttatatatgttcatgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggaga |
35977799 |
T |
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| Q |
101 |
aagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttactt |
200 |
Q |
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| T |
35977800 |
aagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttactt |
35977899 |
T |
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| Q |
201 |
cttctgatatttttcattcctccaaag |
227 |
Q |
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| T |
35977900 |
cttctgatatttttcattcctccaaag |
35977926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 35967567 - 35967736
Alignment:
| Q |
55 |
agtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaat |
154 |
Q |
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| T |
35967567 |
agtgaaaatgaataagatgaggctgcaggagctttgtcaccaaagaaagtggagtttgcctaagtactctgccttgaatgtcgatggtccaccacacaaa |
35967666 |
T |
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| Q |
155 |
ccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaag |
227 |
Q |
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| T |
35967667 |
ccaagctttaagggctctgtctttgtcaatggtttaaccttta---cttctgatgcttttcattcctccaaag |
35967736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 35955125 - 35955287
Alignment:
| Q |
47 |
ggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccac |
146 |
Q |
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|||||| ||||||||||| ||||||| | ||||||||| | |||||||||||| ||||||||||||| | || ||| || | ||||||| ||||||| |
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| T |
35955125 |
ggagtgtaagtgaaaatgcacaagtcaaaactgcaggagctgtgtcaccggagacggtggagtttgcctaagtattctgcctttcatgttgacggtccac |
35955224 |
T |
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| Q |
147 |
cacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgata |
209 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||| | ||||||||||||||||||| |
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| T |
35955225 |
cacacaatccaagctttaagggctctgtttttgtgaatggccttacctttacttcttctgata |
35955287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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