View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3045_low_8 (Length: 242)
Name: NF3045_low_8
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46673653 - 46673876
Alignment:
| Q |
1 |
aaattttctctctcttacataatatgaggtgtcatgttttggttggatgtgaccaaatgttactcccgaaagaaagaagggcatcagctatatttgacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46673653 |
aaattttctctctcttacataatatgaggtgtcatgttttggttggatgtgaccaaatgttactcccgaaagaaagaagggcatcggctatatttgacta |
46673752 |
T |
|
| Q |
101 |
cattaaagtagagttgagatgacaaataagtaaactaaagagtgagtacgtcaacaatagaagcattaactatctcctctcaaccatacaaatatatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46673753 |
cattaaagtagagttgagatgacaaataagtgaactaaagagtgag--cgtcaacaatagaagcattaactatctcctctcaatcatacaaatatatcaa |
46673850 |
T |
|
| Q |
201 |
atttataagaaaaaactactttttag |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46673851 |
atttataagaaaaaactactttttag |
46673876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 39973513 - 39973548
Alignment:
| Q |
23 |
tatgaggtgtcatgttttggttggatgtgaccaaat |
58 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39973513 |
tatgaggtgtcatgttttggttggatatgaccaaat |
39973548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University